GetGenes {brainImageR} | R Documentation

## GenGenes

### Description

`GetGenes` returns the genes that are expressed within a given tissue

### Usage

    GetGenes(genes, composite, tissue_abrev = NULL)

### Arguments

`genes` | Query gene list.
`composite` | Result from SpatialEnrichment
`tissue_abrev` | The tissue of interest.

### Value

Gene overlap between query and tissue of interest

### Examples

    #brainImageR:::loadworkspace()
    ##First put together a gene list, or load in the default vth dataset
    data(vth)
    ##Calculate the spatial enrichment.
    #composite <- SpatialEnrichment(vth, reps = 20, refset = "developing")
    ##Ask which genes are present in any given tissue.
    #available_areanames(composite, slice = 4)
    #vth_in_VZ <- GetGenes(vth, composite, tissue_abrev = "VZ")

[Package brainImageR version 1.1.0 Index]