cgApply {bnbc} | R Documentation

## Apply-type methods

### Description

These functions are apply-type functions for ContactGroup objects.

### Usage

    cgApply(cg, FUN, mc.cores=1, ...)
    cgBandApply(cg, FUN, nbands=NULL, mc.cores=1, bstart=2, ...)

### Arguments

`cg` | A ContactGroup object.
`FUN` | A function to be applied. For `cgApply` this function should operate on a square matrix. For `cgBandApply` this function should operate on a band, ie. a vector (see `band`).
`mc.cores` | The number of cores to be used. Defaults to 1
`bstart` | The first band to apply a function to. Defaults to 2. Only applicable to `cgBandApply`.
`nbands` | The last band to apply a function to. Default is `nrow(cg) - 1`. Only applicable to `cgBandApply`.
`...` | Passed to `mclapply`.

### Details

These methods make it easy to apply functions to either all contact matrices or a set of bands in all contact matrices. Both methods accept a function `FUN`. For `cgApply`, the first argument should be `cg`, the contact group itself. For `cgBandApply`, the first argument should also be `cg`, and the second argument should be a specific band number. Additionally, the bands to be iterated are specified through `bstart:nbands`: `bstart` indicates the starting band, and `nbands` indicates the last band.

### Value

For `cgApply`, a ContactGroup object. For `cgBandApply`, a list whose elements are the returned value of `FUN`.

### See Also

`ContactGroup`, `getBandMatrix`, `band`

### Examples

    data(cgEx)
    cgEx.1 <- cgApply(cgEx, FUN=function(xx){ xx + 1 })
    band.matrix.list <- cgBandApply(cgEx, FUN=getBandMatrix, bstart=2, nbands=5)

[Package bnbc version 1.6.0 Index]