getFreqMutData {bioCancer} | R Documentation

## get mutation frequency

### Description

get mutation frequency

### Usage

    getFreqMutData(list, geneListLabel)

### Arguments

`list` | a list of data frame with mutation data. Each data frame is for one study
`geneListLabel` | file name of geneList examples: "73"

### Value

a data frame with mutation frequency. gene is in rows and study is in column

### Examples

    cgds <- CGDS("http://www.cbioportal.org/")
    ## Not run:
    geneList <- whichGeneList("73")
    r_data <- new.env()
    MutData <- getMutationData(cgds,"gbm_tcga_pub_all",
     "gbm_tcga_pub_mutations", geneList )
    FreqMut <- getFreqMutData(list(ls1=MutData, ls2=MutData), "73")

    ## End(Not run)

[Package bioCancer version 1.12.0 Index]