Node_obj_Met_ProfData {bioCancer} | R Documentation

## Attribute gene Methylation to Nodes

### Description

Attribute gene Methylation to Nodes

### Usage

    Node_obj_Met_ProfData(list, type, threshold)

### Arguments

`list` | a list of data frame with methylation data
`type` | HM450 or HM27
`threshold` | the Rate cases (patients) that have a silencing genes by methylation

### Value

a data frame with node shape attributes

### Examples

    cgds <- CGDS("http://www.cbioportal.org/")
    ## Not run:
    GeneList <- whichGeneList("DNA_damage_Response")
    ProfDataMET <- cgdsr::getProfileData(cgds,GeneList, "gbm_tcga_pub_methylation","gbm_tcga_pub_all")
    ListProfDataMET <- list(ls1=ProfDataMET, ls2=ProfDataMET)
    nodeObj <- Node_obj_Met_ProfData(ListProfDataMET, "HM450",0.1)

    ## End(Not run)

[Package bioCancer version 1.12.0 Index]