getGenesClassification {bioCancer} | R Documentation

## get genes classification

### Description

get genes classification

### Usage

    getGenesClassification(checked_Studies, GeneList,
     samplesize, threshold, listGenProfs, listCases)

### Arguments

`checked_Studies` | checked studies
`GeneList` | gene list
`samplesize` | sample size
`threshold` | p-value threshold
`listGenProfs` | list of genetic profiles
`listCases` | list of cases

### Value

A table with genes classed by study

### Examples

    cgds <- CGDS("http://www.cbioportal.org/")
    listStudies <-  cgdsr::getCancerStudies(cgds)
    ## Not run:
    checked_Stdudies <- listStudies[3:5]
    listCases <- getList_Cases(listStudies[1:3])
    listGenProfs <- getList_GenProfs(listStudies[1:3])
    GeneList <- c('P53', 'IFI16', 'BRCA1')
    samplesize <- 50
    threshold <- 0.95
    table <- getGenesClassification(checked_Studies, GeneList,
    samplesize  ,threshold  ,listGenProfs, listCases)

    ## End(Not run)

[Package bioCancer version 1.12.0 Index]