anota2seqGetNormalizedData {anota2seq} | R Documentation

## Accessor for the 'normalizedDataP' and 'normalizedDataT' slots of an Anota2seqDataSet object.

### Description

Retrieve the data that is used in the analysis (i.e. if raw RNAseq counts were supplied, this function retrieves the normalized counts used in the analysis).

### Usage

    anota2seqGetNormalizedData(object)

    ## S4 method for signature 'Anota2seqDataSet'
    anota2seqGetNormalizedData(object)

### Arguments

`object` | A Anota2seqDataSet.

### Value

A list of 2 elements named "dataP" and "dataT" containing the corresponding normalized data to be used for the analysis. Note that dataT and dataP have the same sample order such that e.g. column 1 in dataP is the translated mRNA data for a sample, column 1 in dataT is the total mRNA data.

### See Also

`Anota2seqDataSet-class`

### Examples

    data(anota2seq_data)
    # Initialize Anota2seqDataSet
    Anota2seqDataSet <- anota2seqDataSetFromMatrix(
        dataP = anota2seq_data_P[1:100,],
        dataT = anota2seq_data_T[1:100,],
        phenoVec = anota2seq_pheno_vec,
        dataType = "RNAseq",
        normalize = TRUE)
    # Get normalized dataP
    normDataP <- anota2seqGetNormalizedData(Anota2seqDataSet)[["dataP"]]
    head(normDataP)

[Package anota2seq version 1.6.0 Index]