annotatr_cache {annotatr} | R Documentation

## A global-variable to hold custom annotations loaded in an R session

### Description

Code thanks to Martin Morgan. This is a global variable that will store custom annotations that a user reads in during a session in which annotatr is loaded.

### Usage

    annotatr_cache

### Format

An object of class `list` of length 3.

### Value

An environment to contain custom annotations from `read_annotations`.

### Examples

     # Example usage
     annotatr_cache$set("foo", 1:10)
     annotatr_cache$get("foo")

     # Read in a BED3 file as a custom annotation
     file = system.file('extdata', 'test_annotations_3.bed', package='annotatr')
     # The custom annotation is added to the annotatr_cache environment in this function
     read_annotations(con = file, name = 'test', genome = 'hg19')
     # The result of read_annotations() is not visible in .GlobalEnv, instead
     # need to use the get method
     print(annotatr_cache$get('hg19_custom_test'))
     # See what is in the annotatr_cache
     annotatr_cache$list_env()

[Package annotatr version 1.10.0 Index]