adapTMLE-class {adaptest} | R Documentation

## Constructor for class adaptmle

### Description

Constructor for class adaptmle

### Value

class `adaptmle` object, sub-classed from SummarizedExperiment.

### Examples

    library(SummarizedExperiment)
    library(airway)
    data(airway)

    example_adaptmle_class <- function(se, n_top = 20, n_fold = 10) {
        call <- match.call(expand.dots = TRUE)
        adaptmle <- .adaptmle(
             SummarizedExperiment::SummarizedExperiment(
                assays = SummarizedExperiment::assay(se),
                colData = SummarizedExperiment::colData(se)
             ),
             call = call,
             folds = list(),  # folds (from origami)
             plot_ingredients = list(),  # top_colname
             diff_exp = as.numeric(rep(NaN, n_top)),  # DE
             p_value = as.numeric(rep(NaN, n_top)),  # p_value
             q_value = as.numeric(rep(NaN, n_top)),  # q_value
             q_sig = as.numeric(rep(NaN, n_top)),  # significant_q
             q_sig_names = list(),  # top_colname_significant_q
             rank_mean = as.numeric(rep(NaN, n_top * n_fold)),  # mean_rank_top
             prob_top = as.numeric(rep(NaN, n_top * n_fold)),  # prob_in_top
             top_index = as.numeric(rep(NaN, n_top * n_fold))  # top_index
        )
        return(adaptmle)
    }

    example_class <- example_adaptmle_class(se = airway)

[Package adaptest version 1.4.0 Index]