.plotIGVUpstreamLenDist {abseqR}R Documentation

Plot IGV family distribution for a given upstreamLengthRange

Description

Given an upstream length range, plot the distributions of IGV family without showing their actual lengths. If their actual lengths matter, refer to .plotIGVUpstreamLenDistDetailed.

Usage

.plotIGVUpstreamLenDist(upstreamDirectories, upstreamOut,
  upstreamLengthRange, lengthType, sampleNames, combinedNames, mashedNames,
  .save = TRUE)

Arguments

upstreamDirectories

list type. List of sample directories

upstreamOut

string type. Output directory

upstreamLengthRange

The range of upstream sequences to be included in this plot. This is usually determined by abseqPy and the format should be as follows: "min_max", e.g.: 1_15 means range(1, 15) inclusive.string type.

lengthType

string type. "" (the empty string) denotes everything and "_short" denotes a short sequence. abseqPy dictates this because it's used for locating the files.

sampleNames

vector type. 1-1 with upstream directories

combinedNames

string type. Title friendly "combined" sample names

mashedNames

string type. File friendly "mashed-up" sample names

.save

logical type. Save Rdata?

Value

None

[Package abseqR version 1.2.0 Index]