dispTable {XBSeq} | R Documentation

## Access the dispersion table information for a XBSeqDataSet object

### Description

A method adopted from DESeq to examine the dispersion table information for a XBSeqDataSet object

### Usage

    dispTable(object, ...)

### Arguments

`object` | a XBSeqDataSet
`...` | further argumnts are ignored

### Value

Dispersion table information for a XBSeqDataSet object

### Author(s)

Yuanhang Liu

### References

H. I. Chen, Y. Liu, Y. Zou, Z. Lai, D. Sarkar, Y. Huang, et al., "Differential expression analysis of RNA sequencing data by incorporating non-exonic mapped reads," BMC Genomics, vol. 16 Suppl 7, p. S14, Jun 11 2015.

### See Also

`estimateSCV`, `dispEst`, `XBSeqDataSet`

### Examples

       conditions <- factor(c(rep('C1', 3), rep('C2', 3)))
       data(ExampleData)
       XB <- XBSeqDataSet(Observed, Background, conditions)
       XB <- estimateRealCount(XB)
       XB <- estimateSizeFactors(XB)
       XB <- estimateSCV(XB, fitType='local')
       dispTable(XB)

[Package XBSeq version 1.16.0 Index]