5d51f95c7887f26f88b4051534da91e7 *DESCRIPTION
8bd6afcf8e152dc9999d9066707cc81a *INDEX
c7735d97142a9ff92189f4f84899a29e *Meta/Rd.rds
cab7bf7fd7d75d6fb146168f62c09901 *Meta/data.rds
25ec83abd15128a8ae9185d893802c45 *Meta/features.rds
6198672717b75003c81a37100c4143bf *Meta/hsearch.rds
fc16698ed25110412f8211a3348e292b *Meta/links.rds
05c4fe514031f29099766e4f28fc47f2 *Meta/nsInfo.rds
944d3aed357f2e57c270192f053436b5 *Meta/package.rds
e62e8607aea6a28e43789a0f754b9757 *Meta/vignette.rds
4c7211b722651c56723f769fd74ef39a *NAMESPACE
302eb74005d4628313dd72f235ada0c6 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/VariantTools
c477b7536c8f39e0f5469d54e69611f5 *R/VariantTools.rdb
c2db497dfc30df374d4105efff3dc353 *R/VariantTools.rdx
147b05616262b8b0605ad82917fe8c23 *data/vignette.rda
8d5ddf1aee747bfe9f75ad0ffc3f13e3 *doc/VariantTools.R
b7f9d4a21e2fe40fe4373ba070ec12c4 *doc/VariantTools.Rnw
dfb3e8f42323bc79b706c3fd7102e1f1 *doc/VariantTools.pdf
e502007f6e906fa8467344cec2f4e1b6 *doc/fig/VariantCallingProcess.pdf
e6a9a9d24613ddbf590543bc5ebeac0d *doc/fig/bar-caller-freq-summary-dbSNP-count-all.pdf
0ea34819326314eae4c6b9d5f4ee9dbe *doc/fig/bar-fdr-cov-bin-merged-all.pdf
1c91bbadcef2b6cba06c5d9b328ba192 *doc/fig/bar-fnr-cov-bin-merged-all.pdf
380b2a619aefe23bd017320b0f05540f *doc/fig/boxplot-altFraction.pdf
34a468a845bb92d33e20533d70da349b *doc/fig/boxplot-expected-obs-freq-source-merged-vt.pdf
dc08e35af067169253e263d844fbc13f *doc/fig/boxplot-obs-freq-sample-ceu-all.pdf
a6d1a91d902b823ea49e3533087adc3a *doc/fig/density-altFraction.pdf
9081576fb3392c333fa126ad4557c53a *doc/fig/dot-percent-recovered-caller-merged-20-all.pdf
31b854f38096fba1546ecf0124be1101 *doc/fig/errors.pdf
ff7f4e378ea15116c447180c721ed35c *doc/fig/hist-fdr-rep-count-all.pdf
cafe8bda6b95fb9dd48a1f3dcd14fca3 *doc/fig/igv_high_cov_neg.png
72c5d2679455c4913dfc6c684c2839e2 *doc/fig/mix.pdf
5192ba8e79d29bf7c9f7f2008dd7aa98 *doc/fig/post-filters.pdf
c81e6de4687156b4883bdefed5c79edb *doc/fig/variant-calling-filters.pdf
8360dff4ce73e85ebe879d662a8da062 *doc/fig/workflow.pdf
a6d9c0aa068f83ee474249201946c09f *doc/index.html
04f3442396ed48d6be465606e784d7ca *doc/tutorial.org
e18d1dc09c30c968212c5bef7d5dd6da *doc/tutorial.pdf
e372e3b655282fec0a7ca5f149509595 *help/AnIndex
d11df539cd245bc989a4ddd8d8c0a2a6 *help/VariantTools.rdb
8a2f4700acae04395743a331869a0ed4 *help/VariantTools.rdx
6d9d97837331419cda2618af1e4a7624 *help/aliases.rds
357e9231bfbf5e2d008f4b96d592846a *help/paths.rds
fe3fc83ebf0018a1b54510f94b9fcecb *html/00Index.html
bb6e00459690741c88bb91fff8859585 *html/FilterConstructors.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
744bdd33f6a04c21724649aa1facb2f9 *html/annnotateWithControlDepth.html
3463fc389a3b9b340966d9f350ebc2dc *html/callGenotypes.html
276769d2027b8c1c752247fc10c17176 *html/callSampleSpecificVariants.html
0c59019f4b73d497bd1829f34a102c9a *html/callVariants.html
5e7f18e8d6054007d22946863d629e08 *html/callWildtype.html
11944ba02423a3e3ab88a7327021146e *html/concordance.html
eaad552f061c3e67b4689e11320e2ab8 *html/extractCoverageForPositions.html
0e40a11ab319b2b83791a56af937d45a *html/matchVariants.html
4b88e7e0bed540c2ef9bda2b40aa84a5 *html/pileupVariants.html
5d282c58fee22f3f638c11534bab10ae *html/postFilterVariants.html
49dfebc760a854994af08defbf737fd4 *html/qaVariants.html
05d3568b678a32a6a2c4c38e0f2cf31f *html/tallyVariants.html
2316368c92ea0ab950b48d1789edf9dd *html/variantGR2Vcf.html
8ca9174b4031f9cdd4a05e72760bc1c4 *html/vignette.html
2c4749f07b3615e481b4df89ca88d34d *unitTests/test_calculateConcordanceMatrix.R
2ff6eb94487808d81e15a164c69023f1 *unitTests/test_idVerify.R
cfc6d0f068fbd1c0cf8017e5aae89743 *unitTests/test_variantConcordance.R
a43c2278392bc452656836bbd0ceafae *vcf/header.csv
