d78e5d4bfb7b395cc500293e255d3365 *CITATION
8734b81cedfa685cf07abc16a42d74b0 *DESCRIPTION
43efaf81f65fd2b2adfef4a4020e9fec *INDEX
f907b12456604a4f124e2e9f359cc721 *Meta/Rd.rds
25ec83abd15128a8ae9185d893802c45 *Meta/features.rds
ca59738b3816e1d2ec59a3f640ae785e *Meta/hsearch.rds
a3ef23a71bd35fb562d430fe04d5df84 *Meta/links.rds
72d1ae5f1b4f579fd38204df1b85804d *Meta/nsInfo.rds
3d4aa98b9b90434a700f4abf5b881ca3 *Meta/package.rds
3a349f5819d30b30d75c49152fe7822a *Meta/vignette.rds
04482a221059efde1226037f94201a6f *NAMESPACE
2d932457d14fd8c7c5f1d6cff47da294 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/VariantAnnotation
cc3f6edb08601ceb20b975ca3f37abff *R/VariantAnnotation.rdb
ec44421ca061810010f23f57d1bfb6aa *R/VariantAnnotation.rdx
516b3343dc68d663fac6a41d21e7c915 *doc/VariantAnnotation.R
dfa5fd2cbcb069a9b6f5730136ba998d *doc/VariantAnnotation.Rnw
85cbd4dcc9d3e4fef6ff4e35dcae9006 *doc/VariantAnnotation.pdf
f900f6b0aef3b2cd12d04d41c3b1b206 *doc/filterVcf.R
d45aa9e2c736ae48706a388fa61770d4 *doc/filterVcf.Rnw
92e74ff491007d292d44735972c3fe8e *doc/filterVcf.pdf
879da333b138ca5d31f64b6639487e51 *doc/index.html
46e78a67f51161387c4c13aeefe80367 *extdata/chr22.vcf.gz
540ee7e114a2c3c9f9730610940ec47f *extdata/chr22.vcf.gz.tbi
a4ca21413e322997ed17c5429e65b9ca *extdata/chr7-sub.vcf.gz
dc5c0ecc784ff39509a164f3020b72f8 *extdata/chr7-sub.vcf.gz.tbi
b325a60a320b6aebb41d41d1dafb9c6d *extdata/ex2.vcf
277341ce20f406ab09a0c23c6bd0d86f *extdata/gl_chr1.vcf
f2a805083bd71e155f977ffb49df2cd5 *extdata/h1187-10k.vcf.gz
fab30e49f0d054d462f8e1737844b204 *extdata/h1187-10k.vcf.gz.tbi
dac0f427ab59994c11859f2b09bab618 *extdata/hapmap_exome_chr22.vcf.gz
ff0775ab73d21645fa114d487e5ebcfd *extdata/hapmap_exome_chr22.vcf.gz.tbi
48852d332eb21dd639b4c6be53762357 *extdata/structural.vcf
305019f4f621ba9ecd1126c527371e18 *help/AnIndex
17268944522bd21721033d2624db8f36 *help/VariantAnnotation.rdb
dec6a42d2f400c91b7742b46372835da *help/VariantAnnotation.rdx
7873694254a4538f54f82752ff8dd374 *help/aliases.rds
a0218112790e4da9928ab881680b0411 *help/paths.rds
e2cba05710c7c23b3c9dbf093bd0d19d *html/00Index.html
d0b4e36875a34f0b6c06c06b977b8871 *html/GLtoGP.html
ed2c8e967a6b1b8e5f5fb0ac0b743fcf *html/PROVEANDb-class.html
6c43e092b929f29ec03805a726e1c608 *html/PolyPhenDb-class.html
b2f2098f34f2ac0413ae518fca5b70e1 *html/PolyPhenDbColumns.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
68946a8f1df01a81dd6079770c01e787 *html/SIFTDb-class.html
e1fd21ab52ce7b95ffa0e0378cf81023 *html/SIFTDbColumns.html
72ea2bfc270487ddf290bf5705778796 *html/ScanVcfParam-class.html
a5a9c48456fe994e174d1098d5e12444 *html/VCF-class.html
7d5d105121b2e0bd223a0b257b96f153 *html/VCFHeader-class.html
9375e398ad914f264f843caed2638549 *html/VRanges-class.html
ad79555e652baa5f1b93b1ffb7c4cbd9 *html/VRangesList-class.html
fd1c7fa4b4fb873ba6f90421e5af050e *html/VariantType-class.html
300ca4bf6f9f053177b0926eaf2b626b *html/VcfFile-class.html
d873dae48af6ae1f0dcf2ee1f0fc1f6e *html/defunct.html
39cf494b7545a45fa3cce3b2718826fd *html/filterVcf-methods.html
3817340c6225f92a457a56780cf9d7a4 *html/genotypeToSnpMatrix-methods.html
572a62c6dcddfdd659aff5a7fe72604c *html/getTranscriptSeqs-methods.html
d9a5134f0e151bf0455dd30cb62b0093 *html/indexVcf-method.html
7547d11438ecfcb92d09faf86361cabd *html/isSNV-methods.html
bb4813bbf9de5d56bb170000c9613637 *html/locateVariants-methods.html
99892ed8feac3e25d9894700dcce8237 *html/predictCoding-methods.html
8ad62b5c6a9ff62ce0008ee894d314eb *html/probabilityToSnpMatrix.html
07f957c22201d509f8cb12c7df8854a6 *html/readVcf-methods.html
3dc6e2e445dbc20643ca61ab8878a002 *html/scanVcf-methods.html
4cd8a19f138f96cb8a4387d276686c52 *html/seqinfo-method.html
9149b46dc3f342c38ff8cd131f46446f *html/snpSummary.html
7062c3652dd36b000dec66ba2fc80fa4 *html/summarizeVariants-methods.html
4b1cad30e2716c3d10445e6bea537424 *html/writeVcf-methods.html
ed51edb165692e6967d215ae6465f265 *libs/i386/VariantAnnotation.dll
4af22ab5f02549e40045626356f0b8ae *libs/x64/VariantAnnotation.dll
17f1c6f05e7a9ff7756b6efabce3f745 *scripts/test_Rplinkseq.R
b7a9592a5de31dd84a3f7e8d1e0332de *unitTests/cases/FORMAT_header_no_SAMPLEs.vcf
9ce56b3cbbb6829d3e3236a106046da0 *unitTests/cases/VarScan_header.vcf
0c5f14796bf4eb3683ceff8e559f43d7 *unitTests/cases/banded_gvcf.vcf
0fbb3e914d7a97208d8d1eb8fcb93026 *unitTests/cases/buffer_realloc.vcf
992d76f76b4634d6ea263b873f92cbac *unitTests/cases/ex1-seq1-90.vcf
4619ce5ed3abf69b38c13f8a72ca9755 *unitTests/cases/expand.vcf
7be3dfdcd77d28fe84fdeb30ea096d58 *unitTests/cases/fewer-FORMAT-than-GENO.vcf
dfc226165c7c64d2e24a1fe952600cdd *unitTests/cases/meta_header.vcf
3d07a0b85a80b389b0ee5ba3dba11b13 *unitTests/cases/missing-FORMAT-metadata-elt.vcf
ba4c3b28d5f63740fda11e70a19eccd7 *unitTests/cases/mixedStructural.vcf
0230db3391a4a664fd5e2236fd0e5a92 *unitTests/cases/multiple_INFO_fields.vcf
752d9d47c17d8f66791ce8804d88dbf6 *unitTests/cases/negative_FORMAT_Number.vcf
39d8ae8aa155e4bac07e9215017143e7 *unitTests/cases/no_FORMAT_column.vcf
4fc8b2f12f8b054e888ce092bb5b5443 *unitTests/cases/no_GENO_row.vcf
a99d3b281abdd928c30fd147de3848a0 *unitTests/cases/no_INFO_header.vcf
0c5bd63cfafbad13a8591b4963e0d411 *unitTests/cases/unspecified_INFO_FORMAT_fields.vcf
0b5b4448b336d5a5b56d18cf818f9712 *unitTests/test_SIFTandPolyPhen.R
d08510e74b080b9d0830a1941740ea90 *unitTests/test_ScanVcfParam-class.R
ebcc3b0eb0b0d8d35618bcd081768b0a *unitTests/test_VCF-class.R
f794098e916c49a86454bb58fe55fdb1 *unitTests/test_VRanges-class.R
98f30f7a93c9bb3ea1605f693d02b569 *unitTests/test_expand-methods.R
ad687c9f6717a20333e98db69fe89286 *unitTests/test_filterVcf.R
7c00151d0528b740a94ddb9a8504898a *unitTests/test_genotypeToSnpMatrix.R
2c2205ed5a0c6d352887365ce90f025a *unitTests/test_isSNV.R
5c303ea47fa41a2fcc89f6c834c5d83e *unitTests/test_locateVariants-methods.R
b92e0e7b951b75b850b37d0204efa1f5 *unitTests/test_predictCoding-methods.R
5044be812d16c430cbc3a2451c10eba4 *unitTests/test_readVcf-methods.R
3da37df132ebdb45ec2a1385786a782e *unitTests/test_scanVcf.R
e45debe5cc9e5a797032c5ece476a74c *unitTests/test_snpSummary.R
d98bfd1bf44ccafabe740b9ae42d1208 *unitTests/test_summarizeVariants-methods.R
118c0fdfd316bc754c56babc45b3bbdf *unitTests/test_vcfFields.R
63c02835c8ecc7f75d976dff37e41444 *unitTests/test_writeVcf-methods.R
