61c3be5de34beed0729495feee49ff85 *CITATION
925c949ce4dd6e94a4343df662d6a97d *DESCRIPTION
5d6410f83386a0604d6753115e870e70 *INDEX
004d99592b7aca2a0cee24085767fd87 *Meta/Rd.rds
523e6a057f51657626a87ac9939e5d37 *Meta/data.rds
25ec83abd15128a8ae9185d893802c45 *Meta/features.rds
5668c24f475c207b4ece190a85c17dc2 *Meta/hsearch.rds
8e7e9f5172ec99eb8675256c71592953 *Meta/links.rds
a885ea4613a9f484a4c5300e50315890 *Meta/nsInfo.rds
91ebd45b0d792abee294d1fb32eafccf *Meta/package.rds
5911da73163ecc8bede6ff24608c2c4b *Meta/vignette.rds
b4cbf4d05af32865b1b62845926a278a *NAMESPACE
0c397c9b1e2cb7558093a8c517f6ad5f *NEWS
1d030c607d59b662b1ab957dbd61b707 *NEWS.Rd
ebf0fc819595d631b8bf280c4b049940 *R/VanillaICE
7ea8822b7efdf0de780b68a508aba827 *R/VanillaICE.rdb
bd60c3693fc735808791bffbf3309efd *R/VanillaICE.rdx
04460dd82132b47636ab633fe6b4d54a *data/snp_exp.rda
2848c45d81d8d476f90835c868b69b2b *doc/VanillaICE.R
56c61f4e95d8ee333f3fde27d99901ad *doc/VanillaICE.Rnw
f42a1d6b54d0dc033c5d578b20bbfd20 *doc/VanillaICE.pdf
c3c2d5fe599901eca8752b382d4b3c76 *doc/crlmmDownstream.R
ea0b1a6285918fc42e4f480684c7269a *doc/crlmmDownstream.Rnw
38c9f009324eca1e0e17d696bdc64120 *doc/crlmmDownstream.pdf
b7390e10af4851bee25fc3539802939e *doc/index.html
0447715fdae0a7d16252fb6ed285ecdd *extdata/FinalReport1664.txt
ced1278febff90110128fe422751bab6 *extdata/FinalReport1675.txt
c70d39336189b7781e5e2f55e23b2642 *extdata/FinalReport1686.txt
bf543d199b10c1dc65ff789680cf5c0d *extdata/FinalReport6841.txt
8b479ef7ca10064b3ef70b840b21d11f *extdata/FinalReport6872.txt
c91acc99db7195be410bcf152b98cf45 *extdata/FinalReport6903.txt
150393f25d768b854316ed30add44767 *extdata/SNP_info.csv
2c1d13e3e83f38aaab3f327961441fc1 *extdata/sample_data.csv
3bd62c5cbb3d924a560070ad6619a328 *extdata/snp_exp.rda
44f96f4d827c643b6387319aa529b284 *help/AnIndex
1bada5c9581fca5bafaeef3e1f03e681 *help/VanillaICE.rdb
44135883b4cf95bf22e5494da693e96a *help/VanillaICE.rdx
c80ed1c2bbd31982f7dd06dadeea7ee6 *help/aliases.rds
e3203e61ee201d0ba340218df2d1cf37 *help/paths.rds
6bf4ec2a863d43813925673d621a56bc *html/00Index.html
28428169d7fa860b12c1b2d4792e769d *html/ArrayViews-class.html
33dd0a097dcf1c935f9c00a188f66283 *html/CopyNumScanParams.html
23df20f3e1ec2ae52a1a8fab2657cda0 *html/EmissionParam-methods.html
af40b208b7d5be4eb172ada5176bae95 *html/FilterParam-class.html
3a84083cc022533ccf990be8c7c45f1b *html/HMM.html
cc2c1c9a78c5153a60070a052d84f6f7 *html/HMMList-class.html
63cf10a419f812b6af9eac71a69512bd *html/HMMList.html
60e18e9cde182ede1bc87b4ac65905d7 *html/HmmGRanges-methods.html
43c6aeee7852af3f0beb7382afe44467 *html/HmmParam.html
e87142c889d31e85795609b46566e3fe *html/HmmTrellisParam.html
68621cb54bef6fb2d6b9c44b5ca4023c *html/IO.html
f3a4875ba83779bda0aa92f86374239a *html/IdiogramParam-class.html
caf31596b1e3e888219ea9f13d015348 *html/IdiogramParams-class.html
01bde6d1d47705d0c7d0a21112647a14 *html/LogLik-class.html
f56e7c908518d165ffda2d36b4b1ab49 *html/LogLik.html
ca4c07b39ac99849d6f686257053c08a *html/LowLevelSummaries.html
8fd8d92f79f2b882d1fe791827080188 *html/NA_filter.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
8b79f7753056314e8db951f118ecf2d9 *html/SnpArrayExperiment-class.html
6447a2ad529bc79fcec3a63bf6f7689e *html/SnpExperiment.html
8315222956cf04dd582d55044432ee0f *html/SnpGRanges.html
fc0c9472a9f5e17fcc8f5daeb31dc5e8 *html/TransitionParam.html
f25b4fde4ac9096122eedbe5b4b38027 *html/VanillaICE.html
955b899cb328fb1be228ed9d0929bdc5 *html/Viterbi-methods.html
ddc865296fa560fc5137fff89249303d *html/acf2.html
46ee2024d3e2e339b5abf031606224cb *html/baumWelchUpdate.html
81e8e10a0963cb9b0ec529c6d033605b *html/calculateEmission.html
b9d2518ad9c456bc0d79befad677287e *html/cnvFilter.html
8a5b8bea3ceba6d069d02c007eda8601 *html/doUpdate.html
90ef6547e2f9af71ffa4ee3c0e4c1c35 *html/dropDuplicatedMapLocs.html
d0d47ad5903d8ea7db219ba41e151a19 *html/dropSexChrom.html
4986ad7bce767f1866372cb0915307bd *html/emission.html
bdd48a0a8f4b2cc030186e8298d42d1b *html/emissionParam.html
06130a502fe070d297785d00e32bd1f4 *html/filters.html
a317546f17cb3239c41a320adce74a24 *html/getExampleSnpExperiment.html
7afd4b1c0425785e1d7abc490de8f0dd *html/getHmmParams.html
2f710a23585356f53597513c40711a34 *html/hmm2.html
19f249fb2e7c6ce40d70b71f06290652 *html/hmmResults.html
e8bc34ff9e51175048656db148dbdf4f *html/isHeterozygous.html
5a410bbf2a84699043c5d8c8c72c5ea6 *html/matrixOrNULL-class.html
68ada4e01f64b8eef2fd596db1baffb0 *html/numberFeatures.html
b2ba0afdaf743f29831b9f36aa95af12 *html/parseSourceFile.html
e93545e07ba7c18a7c6e92e7e346f352 *html/parsedPath.html
5a9661add1de31e241011115f1f1d33d *html/plotting.html
a802e1188c0ce98aff108549db446a68 *html/probability.html
cbd62fc31e5da53736ecbcd25ad131d0 *html/rescale.html
a9562589838016de8adc3ec4aa3135dd *html/robust-statistics.html
74879b737c6fd0e2fe397293d7dd5b54 *html/segs.html
1ebc29e334734cd8f24ef7a5711c069c *html/snpArrayAssays.html
a41107e8716b7a912fa682b875fdb6a7 *html/snp_exp.html
5a74e4fc5c442813f5232ad8463a7c40 *html/sourcePaths.html
4372c191621ac2ff1ea5c60b7e78e275 *html/start-oligoSnpSet-method.html
920774b7d9b119d4b440944be14a2f81 *html/state-methods.html
03ba88570f2e2c36b82e8fbbf582d0e5 *html/sweepMode.html
c574199ea6923de9ed1d2f6f03384c4d *html/threshold.html
34442f502009168e562accd1d45a5fb8 *html/updateHmmParams.html
279eebc08276a770afae7fd8f87ad8a5 *html/viewports.html
f6f762aa6c6fabd917216d7a503d4550 *illumina/illuminaEx.txt
0b443e1e955408727c028fa17ccc294c *libs/i386/VanillaICE.dll
1eba1900beb0bdde36fbe1170217da17 *libs/x64/VanillaICE.dll
9e886f1f9a9dcf7509ec18e836d1b59a *scripts/crlmmDownstream.Rnw
d7e3c6ba592853e822693652ea3c8ced *scripts/crlmmDownstream.pdf
08188c07d38d599e7215712c7c13ad68 *scripts/runcrlmm.R
4a6ea40db9cc44323ef7a2ebcbdaf53f *test/crlmmDownstream.Rnw
3dfb5c4b35c24eb9aa6c627c8a058b7d *unitTests/Makefile
a599bbb548632444ee2137ee39c8274d *unitTests/TestData.R
6dde5b1f827ffa256bc7da02c2d1ca0f *unitTests/test_ArrayViews.R
68b329da9893e34099c7d8ad5cb9c940 *unitTests/test_BeadStudioSet.R
9a254b977ebdcd94f28e4cf3fba91d67 *unitTests/test_FilterParam.R
5bd913e28e19365bbdeeff677ba68ba9 *unitTests/test_HmmGRanges.R
dfffb5205948e7bfb40893f32564b2bb *unitTests/test_HmmParam.R
6e718d7b0e2a4e666a20b7030622acad *unitTests/test_SnpArrayExperiment.R
f4412bbcbbc2cfd4d7843061155c9068 *unitTests/test_SnpGRanges.R
f30b0479f41be30c2b3c918dd57ceb07 *unitTests/test_SummarizedExperiment.R
8ce073cabee54c4fa14542791b601d75 *unitTests/test_acf2.R
e0a5cfd2891210c3d4e8c00a6a916451 *unitTests/test_constraints.R
e7ec704ca20f3f5dfe3650b9885225a3 *unitTests/test_hmm.R
3d369fb3b23ca497b814b2d546a0bfd3 *unitTests/test_loess.R
b972a8334149d38332bad590e6a4966f *unitTests/test_oligoSetList.R
277c2a283746443fa8a7a7f63bae1363 *unitTests/test_rowMAD.R
21fe3065be0dcdd0f16f91fa4ec14c30 *unitTests/test_scaleBy.R
087b3164cf146dcdd6eed2bf4578100f *unitTests/test_sweepMode.R
7028ce08cb57dab82fb7b3bac34c7292 *unitTests/test_viterbi.R
