genotypes {VanillaICE} | R Documentation

## Accessor for SNP genotypes

### Description

Extract SNP genotypes. Genotypes are assumed to be represented as integers: 1=AA, 2=AB, 3=BB.

### Usage

    genotypes(object)

    ## S4 method for signature 'ArrayViews'
    lrr(object)

    ## S4 method for signature 'ArrayViews'
    baf(object)

    ## S4 method for signature 'ArrayViews'
    genotypes(object)

    ## S4 method for signature 'SnpArrayExperiment'
    baf(object)

    ## S4 method for signature 'SnpArrayExperiment'
    copyNumber(object)

    ## S4 method for signature 'SnpArrayExperiment'
    lrr(object)

    ## S4 method for signature 'SnpArrayExperiment'
    genotypes(object)

### Arguments

`object` | see `showMethods("genotypes")`

### See Also

`copyNumber`

[Package VanillaICE version 1.46.0 Index]