LinkDataFrame-class     LinkDataFrame: A S4 class extended from
                        DataFrame An S4 class LinkDataFrame
LinkDataFrame-constructor
                        Construct a LinkDataFrame Construct a
                        LinkDataFrame object
TreeSummarizedExperiment-class
                        An S4 class TreeSummarizedExperiment
TreeSummarizedExperiment-constructor
                        Construct a TreeSummarizedExperiment object
aggValue                Perform data aggregations based on the
                        available tree structures
countLeaf               count the number of leaf nodes
countNode               count the number of nodes
distNode                Calculate the distance between any two nodes on
                        the tree
findAncestor            Find the ancestors of specified nodes
findOS                  Find descendants (or offsprings)
findSibling             find the sibling node
isLeaf                  To test whether the specified nodes are leaf
                        nodes
matTree                 Transform a phylo object into a matrix.
printNode               To print out the node labels
pruneTree               remove branches of a phylo tree
rowLinks                TreeSummarizedExperiment-accessors
shareNode               Find the share node
signalNode              find the optimal nodes to short result.
tinyTree                A simulated phylogenetic tree with 10 tips and
                        9 internal nodes
toTree                  Translate a data frame to a phylo object
trackNode               track the nodes of a phylo tree
transNode               Transfer between node number and node label
