initialize,TargetExperimentList-method {TarSeqQC} | R Documentation

## TargetExperimentList object constructor.

### Description

`initialize` creates the TargetExperimentList object containing the experiment results of several targeted sequencing experiments carried out using a unique bed file.

### Usage

    ## S4 method for signature 'TargetExperimentList'
    initialize(.Object, TEList, feature = NULL,
        attribute = "coverage")

### Arguments

`.Object` | TargetExperimentList class.
`TEList` | List containing all the TargetExperiment objects corresponding to the experiments that will be compared.
`feature` | Character indicating the name of the feature that will be explored (e.g 'amplicon', 'exon', 'gene').
`attribute` | Character indicating the name of the attribute that will be explored. Should be 'coverage' or 'medianCounts'.

### Value

TargetExperimentList object.

### Note

see full example in `TargetExperimentList-class`

### Author(s)

Gabriela A. Merino gmerino@bdmg.com.ar, Cristobal Fresno cfresno@bdmg.com.ar, Yanina Murua ymurua@leloir.org.ar, Andrea S. Llera allera@leloir.org.ar and Elmer A. Fernandez efernandez@bdmg.com.ar

### See Also

`TargetExperimentList`

Other TargetExperimentList: `TargetExperimentList-class`, `TargetExperimentList`, `object`

### Examples

    # Defining the set of TargetExperiment objects
    data(ampliPanel, package="TarSeqQC")
    data(ampliPanel2, package="TarSeqQC")
    ampliList<-list(ampliPanel, ampliPanel2)
    # Defining feature parameter
    feature<-"amplicon"
    # Defining attribute parameter
    attribute<-"coverage"
    ##Calling the constructor
    object<-TargetExperimentList(TEList=ampliList, attribute=attribute,
        feature=feature)

[Package TarSeqQC version 1.14.0 Index]