TargetExperimentList {TarSeqQC} | R Documentation

## TargetExperimentList constructor

### Description

`TargetExperimentList` creates a TargetExperimentList object containing a set of targeted sequencing experiment results, all those, carried out using the same bed file. Feature parameter specifies what represent each panel element (bed file row). Attribute parameter indicates which attribute would be analyzed, 'coverage' or 'medianCounts' and should be specified in order to indicate which coverage or medianCounts should be conserved.

### Usage

    TargetExperimentList(TEList, feature = NULL, attribute = "coverage")

### Arguments

`TEList` | List containing all the TargetExperiment objects corresponding to the experiments that will be compared.
`feature` | Character indicating the name of the feature that will be explored (e.g 'amplicon', 'transcript', 'gene').
`attribute` | Character indicating the name of the attribute that will be explored. Should be 'coverage' or 'medianCounts'.

### Value

TargetExperimentList object.

### Note

see full example in `TargetExperimentList-class`

### Author(s)

Gabriela A. Merino gmerino@bdmg.com.ar, Cristobal Fresno cfresno@bdmg.com.ar, Yanina Murua ymurua@leloir.org.ar, Andrea S. Llera allera@leloir.org.ar and Elmer A. Fernandez efernandez@bdmg.com.ar

### See Also

`TargetExperimentList-class`1

Other TargetExperimentList: `TargetExperimentList-class`, `initialize,TargetExperimentList-method`, `object`

### Examples

    # Defining the set of TargetExperiment objects
    data(ampliPanel, package="TarSeqQC")
    data(ampliPanel2, package="TarSeqQC")
    ampliList<-list(ampliPanel, ampliPanel2)
    # Defining feature parameter
    feature<-"amplicon"
    # Defining attribute parameter
    attribute<-"coverage"
    ##Calling the constructor
    object<-TargetExperimentList(TEList=ampliList, attribute=attribute,
    feature=feature)

[Package TarSeqQC version 1.14.0 Index]