createSummarizedExperiment {TSRchitect} | R Documentation

## createSummarizedExperiment

### Description

`createSummarizedExperiment` creates and reutrns a SummarizedExperiment object from the tag counts on a selected TSR dataset.

### Usage

    createSummarizedExperiment(experimentName, tsrSetType = "merged",
      tsrSet = 1, samplePrefix)

      ## S4 method for signature 'tssObject,character,numeric,character'
    createSummarizedExperiment(experimentName,
      tsrSetType = "merged", tsrSet = 1, samplePrefix)

### Arguments

`experimentName` | an S4 object of class tssObject containing information in slot @tssTagData
`tsrSetType` | specifies the TSR set to be converted into a SummarizedExperiment object. Options are "replicates" or "merged". (character)
`tsrSet` | number of the dataset to be processed (numeric).
`samplePrefix` | the prefix (or prefixes) that match the sample identifiers in the tsrData column. (character)

### Value

a summarizedExperiment object from the specified TSR data set that is to be written to your working directory.

### Note

For more information on the SummarizedExperiment class, please visit https://bioconductor.org/packages/release/bioc/vignettes/SummarizedExperiment/inst/doc/SummarizedExperiment.html

### Examples

    load(system.file("extdata", "tssObjectExample.RData", package="TSRchitect"))
    createSummarizedExperiment(tssObjectExample, tsrSetType="merged", tsrSet=1,
    samplePrefix=c("sample1","sample2"))

[Package TSRchitect version 1.10.12 Index]