tpp2dExport {TPP} | R Documentation

## Produce Excel table of 2D-TPP experiment.

### Description

Produce Excel table of 2D-TPP experiment analysis results.

### Usage

    tpp2dExport(configTable = NULL, tab, resultPath = NULL, idVar = NULL,
      fcStr = NULL, intensityStr = NULL, outPath, addCol = NULL,
      normalizedData = NULL, trRef = NULL, addPlotColumns = TRUE)

### Arguments

`configTable` | DEPRECATED
`tab` | Table with results of the 2D-TPP analysis.
`resultPath` | DEPRECATED
`idVar` | DEPRECATED
`fcStr` | DEPRECATED
`intensityStr` | DEPRECATED
`outPath` | path for storing results table
`addCol` | additional names of columns which are to be attached to the result table
`normalizedData` | DEPRECATED
`trRef` | character string containing a valid system path to a TPP-TR reference RData file
`addPlotColumns` | boolean variable indicating whether paths to plot files should be generated and checked for validity. De-activate if no dose-response curve plots were produced during the analysis.

### Value

Creates excel file of the TPP-CCR analysis of the 2D-TPP data.

### Examples

    data(panobinostat_2DTPP_smallExample)
    load(system.file("example_data/2D_example_data/shortData2d.RData", package="TPP"))
    # tpp2dExport(configTable = panobinostat_2DTPP_config, tab=shortData2d,
    #             outPath=getwd(),
    #             idVar="representative", fcStr="norm_rel_fc_protein_",
    #             intensityStr="sumionarea_protein_", addCol=NULL)

    data(panobinostat_2DTPP_smallExample)
    # cfgRaw <- panobinostat_2DTPP_config
    # datRaw <- panobinostat_2DTPP_data
    # datIn <- tpp2dImport(cfgIn, datRaw, fcStr = NULL)
    # datFC <- tpp2dComputeFoldChanges(data = datIn)
    # datNorm <- tpp2dNormalize(data = datFC)
    # cfgCCR <- convert_2D_cfgTable_to_CCR_cfgTable(cfgIn)
    # datFitted <- tpp2dCurveFit(datNorm, nCores = 2)
    # tpp2dCreateReport(getwd(), cfgIn, resultTable = datFitted, idVar = "representative",
    #                   intensityStr = "sumionarea_protein_")
    # tpp2dExport(tab = datFitted, outPath = getwd(), addPlotColumns = FALSE)

[Package TPP version 3.12.0 Index]