computeFdr {TPP2D}R Documentation

Compute FDR for given F statistics based on true and null dataset

Description

Compute FDR for given F statistics based on true and null dataset

Usage

computeFdr(df_out, df_null)

Arguments

df_out

data frame containing results from analysis by fitAndEvalDataset

df_null

data frame containing results from analysis by bootstrapNull

Value

data frame annotating each protein with a FDR based on it's F statistic and number of observations

Examples

data("simulated_cell_extract_df")
temp_df <- simulated_cell_extract_df %>% 
  filter(clustername %in% paste0("protein", 1:5)) %>% 
  group_by(representative) %>% 
  mutate(nObs = n()) %>% 
  ungroup 
example_out <- fitAndEvalDataset(temp_df)
example_null <- bootstrapNull(temp_df, B = 2/10)
computeFdr(example_out, example_null)
[Package TPP2D version 1.0.0 Index]