TFtargs {TFutils} | R Documentation

## gadget to help sort through tags naming TFs

### Description

gadget to help sort through tags naming TFs

### Usage

    TFtargs(gscoll = TFutils::tftColl, initTF = "VDR_Q3",
      gwcat = TFutils::gwascat_hg19_chr17,
      gadtitle = "Search for a TF; its targets will be checked for mapped status in GWAS catalog")

### Arguments

`gscoll` | a GSEABase GeneSetCollection
`initTF` | character(1) initial TF string for app
`gwcat` | GRanges-like structure with GWAS catalog information
`gadtitle` | character(1) a title for the gadget panel

### Value

on app conclusion a data.frame is returned

### Note

Will use TFutils::gwascat_hg19_chr17 to look for 'MAPPED_GENE' field entries matching targets, also hardcoded to use org.Hs.eg.db to map symbols

### Examples

    if (interactive()) TFtargs()

[Package TFutils version 1.4.0 Index]