grabTab {TFutils} | R Documentation

## create table of TF targets and related metadata

### Description

create table of TF targets and related metadata

### Usage

    grabTab(tfstub = "STAT1", gscoll = TFutils::tftColl,
      orgdb = org.Hs.eg.db::org.Hs.eg.db,
      gwrngs = TFutils::gwascat_hg19_chr17)

### Arguments

`tfstub` | character(1) gene-like symbol for TF; will be grepped in names(gscoll)
`gscoll` | a GSEABase GeneSetCollection
`orgdb` | an instance of OrgDb as defined in AnnotationDbi
`gwrngs` | a GRanges representing EBI gwascat, must have `DISEASE/TRAIT`, `MAPPED_GENE`

### Value

data.frame instance

### Note

This function will link together information on targets of a given TF to the GWAS catalog.

### Examples

    gt = grabTab("VDR", gscoll=TFutils::tftColl,
       orgdb=org.Hs.eg.db::org.Hs.eg.db, gwrngs=TFutils::gwascat_hg19_chr17)
    dim(gt)
    head(gt)

[Package TFutils version 1.4.0 Index]