Package: TCGAutils
Title: TCGA utility functions for data management
Version: 1.4.0
Description: A suite of helper functions for checking and manipulating TCGA data
    including data obtained from the curatedTCGAData experiment package. These
    functions aim to simplify and make working with TCGA data more manageable.
Authors@R: c(
    person("Marcel", "Ramos", email = "marcel.ramos@roswellpark.org",
        role = c("aut", "cre")),
    person("Lucas", "Schiffer", role = "aut"),
    person("Sean", "Davis", role = "ctb"),
    person("Levi", "Waldron", role = "aut")
    )
Depends: R (>= 3.6.0)
Imports: AnnotationDbi, BiocGenerics, GenomeInfoDb, GenomicFeatures,
        GenomicRanges, GenomicDataCommons, IRanges, methods,
        MultiAssayExperiment, RaggedExperiment (>= 1.5.7), rvest,
        S4Vectors, stats, stringr, SummarizedExperiment, utils, xml2
Suggests: BiocFileCache, BiocStyle, curatedTCGAData, devtools, dplyr,
        IlluminaHumanMethylation450kanno.ilmn12.hg19, impute, knitr,
        magrittr, minfi, mirbase.db, org.Hs.eg.db, readr, RTCGAToolbox
        (>= 2.7.5), rtracklayer, R.utils, testthat,
        TxDb.Hsapiens.UCSC.hg19.knownGene,
License: Artistic-2.0
Encoding: UTF-8
LazyData: true
BugReports: https://github.com/waldronlab/TCGAutils/issues
biocViews: Software, WorkflowStep, Preprocessing
VignetteBuilder: knitr
RoxygenNote: 6.1.1
git_url: https://git.bioconductor.org/packages/TCGAutils
git_branch: RELEASE_3_9
git_last_commit: 5d914ba
git_last_commit_date: 2019-05-02
Date/Publication: 2019-05-02
NeedsCompilation: no
Packaged: 2019-05-03 05:18:41 UTC; biocbuild
Author: Marcel Ramos [aut, cre],
  Lucas Schiffer [aut],
  Sean Davis [ctb],
  Levi Waldron [aut]
Maintainer: Marcel Ramos <marcel.ramos@roswellpark.org>
Built: R 3.6.0; ; 2019-05-03 14:33:08 UTC; windows
