584b1df91607a8e3b5c091a3ce79af8e *DESCRIPTION
87b5399d10c4f42372aa7ce1223c77ce *INDEX
b86f46e941fd9be44059c7317dd85af7 *Meta/Rd.rds
25ec83abd15128a8ae9185d893802c45 *Meta/features.rds
6f75a94a2256a156147ffec22a965b01 *Meta/hsearch.rds
05cd3316eb5322e1324f74a61dfe2940 *Meta/links.rds
3d021bb72c877b9726483211f4c41869 *Meta/nsInfo.rds
3d85921762d3eac48b82a5185eaa7da2 *Meta/package.rds
30c2cd58105b8ed65a8fde8b1f8270ce *Meta/vignette.rds
cda6857c1a8570d689380c737a67ee7f *NAMESPACE
188521dc51287dda57889dd35ef026d4 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/StructuralVariantAnnotation
be4253513e7d13ac099c13c928b838a1 *R/StructuralVariantAnnotation.rdb
f3c937921ec4c4e6fca1acbd6257743a *R/StructuralVariantAnnotation.rdx
1891dbf87ca9fce1945b16dd64840348 *doc/index.html
70672079d5db003697bd0768062b93bf *doc/vignettes.R
54a1f4d8ecc042b4c462e9f1db312bf3 *doc/vignettes.Rmd
44a8ca924a392dbcb38f59262ed2d599 *doc/vignettes.html
12ee44ba494bc06baa7369469700f7c8 *extdata/COLO829T.purple.sv.ann.vcf.gz
683caf164bb74e29552f0177e876add2 *extdata/breakdancer-1.4.5.vcf
feeaad3d5ec237cff7761c7d04431b78 *extdata/breakend.vcf
2ab83f00d360b12f5cece00c82e5c0b0 *extdata/crest.vcf
c972e2f7fde3e39dcafa159e96732617 *extdata/delly-0.6.8.vcf
4927fa10b4842cfa4ba38c9d5fc7d8c8 *extdata/gridss-na12878.vcf
cc82ed7e26d2d0490714f9c52882a605 *extdata/gridss.bedpe
5e5ae0f5c15eef2943d75b9168031c47 *extdata/gridss.vcf
8cd93102afc733e1f81cd323eacf21c5 *extdata/manta-0.29.6.vcf
1cf2f3eda533b5cd761a71a78cac7ad7 *extdata/manta-1.1.1.vcf
cb53d99797872f13ba066e3551a6d3d2 *extdata/multipleAltSVs.vcf
7b54dafc7a0b36ddaa85c861e745b8f9 *extdata/na12878_chr22_Sudmunt2015.vcf
ebbaf305e07754a431a7200b122a8561 *extdata/na12878_chr22_crest.vcf
63206a566ee14bcb7fedd85e214a9f10 *extdata/na12878_chr22_hydra.vcf
489550bafad9c87b6441721b379966a6 *extdata/pindel-0.2.5b6.vcf
fbb8e101fb854f488c4f26df2b490451 *extdata/simple.vcf
a489a6898e1a6c617b09baa2f0fbc037 *extdata/tigra-0.3.7.vcf
a0a6d82bbcd08187186af68b4c339819 *extdata/unnamed.bedpe
27f53f9124a138ed7da6181719f34881 *extdata/vcf4.2.example.sv.vcf
c697e521e40c093b4b07df6b09ba27cc *help/AnIndex
5cb3a57e7ed252b773410a1a68237783 *help/StructuralVariantAnnotation.rdb
6d99035773533b3fbf43b9f957dfa084 *help/StructuralVariantAnnotation.rdx
968e02b74a039b47646318f2e973a2c3 *help/aliases.rds
31f35d4c2fcaa65f9386a6416db3699f *help/paths.rds
6d6df94772d6564de7c37c2bae005ed2 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
485a2c16b257a25f5681881c99064363 *html/StructuralVariantAnnotation.html
567bce94a753ab9eaa59c2f868425977 *html/align_breakpoints.html
dcad081b3027ba8380833e8e8bfc8430 *html/breakendRanges.html
579e4235abecc8e7c07589cda7b78122 *html/breakpointGRangesToVCF.html
e0ae166c6276c6f6192f6a37a60c8655 *html/breakpointRanges.html
5b24c7c465fbca806e53275ab101896b *html/breakpointgr2bedpe.html
4f2975529495138ee0ef13fc0869e67a *html/calculateReferenceHomology.html
2990fb5d4b53819efdd36e66365d7700 *html/countBreakpointOverlaps.html
3e445c9420e4a564f4652b8d65ff113d *html/dot-constrict.html
608e930c49e99be0aa5b442b26d14267 *html/dot-isSymbolic.html
2b72d34b7fe75b4c1edd5866a71f5bfd *html/dot-pairwiseLCPrefix.html
83905da450cc960b1e01f4300eee916d *html/dot-svLen.html
a112a8f1eb6ccea69f6f0b47624da4aa *html/dot-testfile.html
4d629046fa41c34ea77ae2bc57f469c5 *html/dot-testrecord.html
04a27cc6e02f0f334185ca25dc5fa2b4 *html/dot-toVcfBreakendNotationAlt.html
b22abbd5339ddeec795e40984541709e *html/dot-unXStringSet.html
c58ddfd3f1d38c42d1357e2b4ce16d8d *html/elementExtract.html
3e18f2f65422fd05270a2c5b5d754d79 *html/extractBreakpointSequence.html
0e2c2f205a9fdb1268fc3e28d2064cad *html/extractReferenceSequence.html
a218bbd42c203f6bd8d462286a6b3132 *html/findBreakpointOverlaps.html
fc9ab636182dc3ea9a85129c933b7812 *html/grapes-na-grapes.html
0100fceb5481dfeffbb006387659b84c *html/grapes-null-grapes.html
3c49ab2d90dd0d11d562ebcdb1bd4119 *html/isStructural.html
a4140e0b9748667b415aef2b5a7d5df4 *html/isSymbolic.html
473f66a455796cc2b21692e030c79ee8 *html/pairs2breakpointgr.html
b827b90e71236b978bdfceda39c2f054 *html/partner.html
