SplicingGraphs-class    SplicingGraphs objects
SplicingGraphs-package
                        Create, manipulate, visualize splicing graphs,
                        and assign RNA-seq reads to them
TSPCsg                  TSPC splicing graphs
assignReads             Assign reads to the edges of a SplicingGraphs
                        object
bubbles-methods         Compute the bubbles of a splicing graph
countReads-methods      Summarize the reads assigned to a
                        SplicingGraphs object
plotTranscripts-methods
                        Plot a set of transcripts along genomic
                        coordinates.
rsgedgesByGene-methods
                        Extract the reduced edges and their ranges from
                        a SplicingGraphs object
sgedges-methods         Extract the edges (and nodes) of a splicing
                        graph
sgedgesByGene-methods   Extract the edges and their ranges from a
                        SplicingGraphs object
sgraph-methods          Extract a splicing graph as a plottable
                        graph-like object
toy_data                Little helpers for quick access to the toy data
                        included in the 'SplicingGraphs' package
txpath-methods          Extract the transcript paths of a splicing
                        graph
