Combining LEMs {SingleCellExperiment} | R Documentation

## LEM combining methods

### Description

Methods to combine LinearEmbeddingMatrix objects.

### Usage

    ## S4 method for signature 'LinearEmbeddingMatrix'
    rbind(..., deparse.level=1)

    ## S4 method for signature 'LinearEmbeddingMatrix'
    cbind(..., deparse.level=1)

### Arguments

`...` | One or more LinearEmbeddingMatrix objects.
`deparse.level` | An integer scalar; see `?base::cbind` for a description of this argument.

### Details

For `rbind`, LinearEmbeddingMatrix objects are combined row-wise, i.e., rows in successive objects are appended to the first object. This corresponds to adding more samples to the first object. Note that `featureLoadings` and `factorData` will only be taken from the first element in the list; no checks are performed to determine whether they are consistent or not across objects.

For `cbind`, LinearEmbeddingMatrix objects are combined columns-wise, i.e., columns in successive objects are appended to the first object. This corresponds to adding more factors to the first object. `featureLoadings` will also be combined column-wise across objects, provided that the number of features is the same across objects. Similarly, `factorData` will be combined row-wise across objects.

Combining objects with and without row names will result in the removal of all row names; similarly for column names. Duplicate row names are currently supported by duplicate column names are not, and will be de-duplicated appropriately.

### Value

A LinearEmbeddingMatrix object containing all rows/columns of the supplied objects.

### Author(s)

Aaron Lun

### Examples

    example(LinearEmbeddingMatrix, echo=FALSE) # using the class example
    rbind(lem, lem)
    cbind(lem, lem)

[Package SingleCellExperiment version 1.6.0 Index]