SFlabels {SigFuge} | R Documentation

## Calculate SigFuge labels

### Description

Function for producing vector of SigFuge labels using 2-means clustering on non-low expression normalized data and combining with low expression flags. Typically, `SFlabels` is used by passing output from `SFnormalize`.

### Usage

      SFlabels(normData)

### Arguments

`normData` | a list containing `data.norm` a d x (n-m) matrix of normalized read counts at d positions for (n-m) samples where n is the total number of samples and m is the number of low expression samples. `flag` a n x 1 logical vector of flagged samples with sum(flag) = m.

### Value

`SFlabels` returns a n x 1 vector of class labels.

### Author(s)

Patrick Kimes <pkimes@live.unc.edu>

### Examples

    data(geneDepth)
    normalizedData <- SFnormalize(geneDepth)
    labels <- SFlabels(normalizedData)

[Package SigFuge version 1.22.0 Index]