aeab950bee58fcca0c51dab3766b6a3e *CITATION
2e51d9a8d9d513173c9596c7ecd6435c *DESCRIPTION
eb4e7591368c76f0496fbdb16d0d016b *INDEX
8f853889617137ea0d83c3844647181a *Meta/Rd.rds
d455dc760576ca28b32baaaa76a150f6 *Meta/data.rds
25ec83abd15128a8ae9185d893802c45 *Meta/features.rds
5b80080a684a96f5008484d166fd580a *Meta/hsearch.rds
e0aadb0fe85061bc40c42120a9ff43c0 *Meta/links.rds
f2965e837bdbc3cf0325cd4d84ea34d9 *Meta/nsInfo.rds
8d3dcacf1700afdcfe82c01e313224fe *Meta/package.rds
1941113a93285bebe90719f0cbf78dce *Meta/vignette.rds
4c068cc3d0d28139f5ef50700dd174bb *NAMESPACE
eee0094f742a2e898fa42f2687ae08d5 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/SeqGSEA
bb52c99fb48d9ab35b8283463742a6af *R/SeqGSEA.rdb
5a423e8778dcd5079899c6a22f490111 *R/SeqGSEA.rdx
0de951c8acb635491137dd18ea274d3c *data/DEscore.RData
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01eb20f550590c90a09c3c66be19cfe3 *data/DSscore.RData
0dde568ce46206f2cdfd093e657ec717 *data/DSscore.perm.RData
1329bfa58cd12a17be862b75e63f0d28 *data/GS_example.RData
32415601bef23b9cd7a3f287920787e2 *data/RCS_example.RData
503f9f527192840a4197a568c15c9523 *doc/SeqGSEA.R
e1ae461c8dd63eb42cd0011451272c01 *doc/SeqGSEA.Rnw
cc76114c1d34fe47c96c3639356df36c *doc/SeqGSEA.pdf
afa83dbacb8ca9adc13efb1d47d56ee4 *doc/index.html
aa55e94bc8a566642e2185b96a3af157 *extdata/SC02.exonCnt.txt
0db4255cfc2712875daef3b4cad2fb30 *extdata/SC03.exonCnt.txt
a5b3f6a1fd87583872c6e125787769a0 *extdata/SC06.exonCnt.txt
46c91a7af23910fcec920eba62d31181 *extdata/SC08.exonCnt.txt
7e5ce78db9689017625c617ef766d9a7 *extdata/SC09.exonCnt.txt
50040700402df45704b7818bdaa5939c *extdata/SC11.exonCnt.txt
8e9b647d49feb3eeebf4f08cacfaa264 *extdata/SC13.exonCnt.txt
744f526772bc3c5e2339960a069fc5b9 *extdata/SC15.exonCnt.txt
9cbbedac1f57b91f4d54fcd0dcbea92e *extdata/SC19.exonCnt.txt
cf06c735cdfcd748ae4952306916f00b *extdata/SC23.exonCnt.txt
82ea07828e987a34016fd6df0a0ae8b7 *extdata/SN02.exonCnt.txt
69dbf83514ff2e35b2e049fb682598b9 *extdata/SN03.exonCnt.txt
d7d5badfedd65d3be5afc63b7b8ad767 *extdata/SN06.exonCnt.txt
4d1b6d41d721cb6e4c7568da2f374976 *extdata/SN08.exonCnt.txt
92d7d1a7b75d1553e25fd7c6716185da *extdata/SN09.exonCnt.txt
56e14a678cad226729b15bfe71ebcdb8 *extdata/SN11.exonCnt.txt
b55cbbb76d20758c07cb8acadab0bac6 *extdata/SN13.exonCnt.txt
ba8e84b422451b2cb406e271f6ecf700 *extdata/SN15.exonCnt.txt
e4de0cb79dae4a7617e82b961cba6c14 *extdata/SN19.exonCnt.txt
45b051c29bb812d73224c2e5db2e33d6 *extdata/SN23.exonCnt.txt
99a21bc95ce21d5613695746794ff2c3 *extdata/geneCounts.txt
e10c7313a4977ab1016ee89dca648b14 *extdata/gs_symb.txt
c4beb55cebd8c597c3193a087ae50783 *extscripts/count_in_exons.py
2849d48898b0f98630609b8806b285fc *extscripts/prepare_exon_annotation_ensembl.py
3fd83cc194195f2ccbff8d751d4c7463 *extscripts/prepare_exon_annotation_refseq.py
3bcbbcf1c2ac6c414599721cd3b11fa7 *help/AnIndex
b13db9d144a821b2d3be33e9ac708715 *help/SeqGSEA.rdb
32f4e7c63fecf300f268ed2de753e72a *help/SeqGSEA.rdx
48c38987a49cb440070bafb7c037acb1 *help/aliases.rds
4d946c91e1f244107567309a2b5c376b *help/paths.rds
948bd9b5ec273b1ba151aa9e341cb8e1 *html/00Index.html
01e8449cc528f698e02b69147a303675 *html/DENBStat4GSEA.html
d18fca2c102f4622827fb917c29c80c4 *html/DENBStatPermut4GSEA.html
384ba9b9a6f6e0fcff52ba7c063f88a4 *html/DENBTest.html
3bf752527158ad2154c58795f7c65d85 *html/DEpermutePval.html
e859452543a2ec4a08b21a5516da2e12 *html/DEscore.html
81546a5bc1846e9f0d49a40b850eefeb *html/DSpermute4GSEA.html
b2288f1bf623e53f08c3eae9e3447153 *html/DSpermutePval.html
f10b9893e6ed3173d3ff34f2090041f7 *html/DSresultExonTable.html
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9de0a83667881519a3535eb4aa7c3497 *html/GSEAresultTable.html
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1fc2274a2c027c53688fce477bb64cb6 *html/RCS_example.html
2752018e015cd43dbc0e01f97caf592b *html/ReadCountSet-class.html
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e33412944c6d507766fd6b2bdd8ecfc5 *html/SeqGeneSet-class.html
d9857c970257205e207f56f32be347eb *html/calES.html
8680cfea926a05dfc0e51ec93938b1ed *html/calES.perm.html
448936e60e758789a71676328d038d81 *html/convertEnsembl2Symbol.html
cae78b0c31389fd48aa61e80cf80d660 *html/convertSymbol2Ensembl.html
1898e6897f717a6e8cca18ec6bee9d5a *html/counts-methods.html
a01addf7ae5358f6fd2b9976b36ace60 *html/estiExonNBstat.html
222c607ab261f047da7c38b4c54d1af4 *html/estiGeneNBstat.html
368c683deba2dedbbc68ada52658cb63 *html/exonID.html
2134d676c357966b64a7fead71591df8 *html/exonTestability.html
1ce74b5360d9280cafbd7abf546a826a *html/geneID.html
7511321ca2d88bad73b82bd70e3a972f *html/geneList.html
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7c87d9325516c4c433bf11c35284ea86 *html/geneSetSize.html
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42963e5a428f103ce10dc36022bb61c6 *html/genpermuteMat.html
997bb8a37a9071fd0511a6036ccd47bb *html/getGeneCount.html
ab7d912909d2ea849809f328b7bcc066 *html/label.html
0fa701ce3371bb0099523fafe7397a51 *html/loadExonCountData.html
8e6f8e9c533b4f53a43110fb7f1fc488 *html/loadGenesets.html
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23d183e8591ba26be9516e560cb46898 *html/normES.html
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a0ae44b2140d2b3adf6cff89201bd678 *html/plotES.html
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dae8208273f3aeb71723b7d7c7b9b71c *html/plotSig.html
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5ad0826e83b8803b8a810178ec824f51 *html/runDESeq.html
16a410f18ceabf60c76c79904e9ce382 *html/runSeqGSEA.html
cf7ead2b88e7d7d479404bec1612da35 *html/scoreNormalization.html
54dab39c9c9737016f1d3c4e7ea36856 *html/signifES.html
3f6988e20f245733fc54607067cccf1c *html/size.html
4a56bac8fccb25893376ec490f9850ee *html/subsetByGenes.html
8dc32e3de3c7e020c655e85f68ebb971 *html/topDEGenes.html
2de86cd9b81a2f58b5814be2a140093a *html/topDSExons.html
573791b303654a851182824019e577ca *html/topDSGenes.html
20c4b3a035775381a3031ce87d37cb82 *html/topGeneSets.html
b2966fb52359609d9b1087642cb8d1aa *html/writeScores.html
dbbdf093730ede188481c50736d53b62 *html/writeSigGeneSet.html
