sponge_build_null_model {SPONGE} | R Documentation

## Build null model for p-value computation

### Description

Build null model for p-value computation

### Usage

    sponge_build_null_model(number_of_datasets = 1e+05, number_of_samples,
      cov_matrices = precomputed_cov_matrices, ks = seq(0.2, 0.9, 0.1),
      m_max = 8, log.level = "ERROR")

### Arguments

`number_of_datasets` | the number of datesets defining the precision of the p-value
`number_of_samples` | the number of samples in the expression data
`cov_matrices` | pre-computed covariance matrices
`ks` | a sequence of gene-gene correlation values for which null models are computed
`m_max` | null models are build for each elt in ks for 1 to m_max miRNAs
`log.level` | The log level of the logging package

### Value

a list (for various values of m) of lists (for various values of k) of lists of simulated data sets, drawn from a set of precomputed covariance matrices

### Examples

    sponge_build_null_model(100, 100,
    cov_matrices = precomputed_cov_matrices[1:3], m_max = 3)

[Package SPONGE version 1.6.2 Index]