selex.countSummary {SELEX} | R Documentation

## Summarize available K-mer count tables

### Description

This function returns the sample, kmer length, offset, minimum/maximum count, total count, and applied filters for either all count tables or a specified sample in the current working directory.

### Usage

    selex.countSummary(sample=NULL, displayFilter=FALSE)

### Arguments

`sample` | A sample handle to the sample for which K-mer count statistics should be returned.
`displayFilter` | Display all applied sequence filter attributes.

### Details

Minimum count refers to the lowest count observed for a kmer of length k for a given sample. Total count is the sum of counts over all kmers of length k for a given sample.

### Value

`selex.countSummary` returns a data frame containing the sample, kmer length, offset, minimum/maximum count, total count, and applied filters for all count tables in the current working directory. If `sample` is provided, the above information is given for the specific sample only.

### See Also

`selex.counts`, `selex.summary`

### Examples

    selex.countSummary()

[Package SELEX version 1.16.0 Index]