comp.trees {Rtreemix} | R Documentation

## Functions for quantifying the diversity of the nontrivial trees in a mutagenetic trees mixture model

### Description

These functions implement a similarity measure for comparing the topologies of the nontrivial tree components of a specified mixture model, and thereby quantifying their diversity. All possible pairs of nontrivial components are considered when computing the similarity. `comp.trees` uses the sum of the number of different edges of all pairs for caracterizing the difference of the trees in the model. `comp.trees.levels` uses the sum of the number of different edges of all pairs and the corresponding L1 distances of their level vectors. The model must have at least two nontrivial components.

### Usage

    comp.trees(model)
    comp.trees.levels(model)

### Arguments

`model` | An `RtreemixModel` object.

### Value

The functions return a numeric value that quantifies the similarity (or diversity) of the nontrivial tree topologies of a given mixture models.

### Author(s)

Jasmina Bogojeska

### See Also

`RtreemixModel-class`, `comp.models`, `fit-methods`, `stability.sim`

### Examples

    ## Generate two random RtreemixModel objects each with 3 components.
    mix1 <- generate(K = 3, no.events = 9, noise.tree = TRUE, prob = c(0.2, 0.8))
    mix2 <- generate(K = 3, no.events = 9, noise.tree = TRUE, prob = c(0.2, 0.8))
    ## Inspect the diversity of the nontrivial tree components in a given model
    ## using the number of distinct edges and the levels of the events in
    ## the treesas dissimilarity measure.
    comp.trees.levels(model = mix1)
    comp.trees.levels(model = mix2)

[Package Rtreemix version 1.46.0 Index]