70742ca541d791a1be5651a348aaa97a *CITATION
2d26346ea1415e2d3dc7b5181627efdc *DESCRIPTION
449f3c53534d4c988c9a5248bc907743 *INDEX
66554d8274fec8a847371fa9ce6463b7 *Meta/Rd.rds
bd222890bc05371c0b7aadcdcef47626 *Meta/data.rds
25ec83abd15128a8ae9185d893802c45 *Meta/features.rds
625dbf529c1a5c8fb39dac091c1651a8 *Meta/hsearch.rds
5688305afc17f63dccd3ee04e3ba09b4 *Meta/links.rds
bf5f66f2826535a1c3d080552640781a *Meta/nsInfo.rds
938143408c27eeddd2f719c4405f10f9 *Meta/package.rds
d6b56e6ea0dbcdb5c8a07c26fe2fb1a6 *Meta/vignette.rds
63cd0f62f0de14823d1bc65c85ad738c *NAMESPACE
af6b727ddf54880d6787e70ef1d6e8a1 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/RnBeads
e321b24fa168561350bf0f23ef1f6ae6 *R/RnBeads.rdb
fcbd50ef0c2c59fdfd6432986536f374 *R/RnBeads.rdx
6a38aa7933204d60b7fb5323b22ae22e *bin/linux_x86.64/bedGraphToBigWig
a63e22129c28a2fabf7f8533a985a674 *bin/linux_x86.64/bedToBigBed
0c7ef03e5fe5085f4c22a63c7b588adc *bin/macOSX.i386/bedGraphToBigWig
5cd1e1ced865157578843f27f1bde01a *bin/macOSX.i386/bedToBigBed
bac4aaa1442f47c169abcfb03f224a2f *data/lump.RData
b7b13bd7662357e4fcac92fcf438902a *doc/RnBeads.R
d00b7410fe7d617af1570f1de31cfae8 *doc/RnBeads.Rnw
ea792d9e1fd9ccd6500773c400da34c4 *doc/RnBeads.pdf
fd30aeeeb8b38ab9a1c92560fed9e28b *doc/RnBeads_Annotations.R
d16a28074a3f0ed6a0503561a9bc05cf *doc/RnBeads_Annotations.Rnw
0c8a4ba03485c0b19af736856debaf1b *doc/RnBeads_Annotations.pdf
fb8b58efdb822e31d8f1ce6d78f41035 *doc/index.html
fc362df333fc6175e6e62a66960814e9 *extdata/RnBeads.png
87f9397bab7759f01264861d6946b697 *extdata/RnBeadsDJ/README.md
f48aa2d4d7ad717fd3d5a5046db2226d *extdata/RnBeadsDJ/app.R
b7b87f88af910b81648149406c151fd6 *extdata/RnBeadsDJ/www/img/rnbeads_logo.png
e8db2d982b84d06cfddcb4a65acc5708 *extdata/RnBeadsDJ/www/js/directory_input_binding.js
176660115ccb2d723f38dd8a0cfca404 *extdata/RnBeadsDJ/www/js/localfile_input_binding.js
8e1dc9bf853be935e0a8b7df8896029a *extdata/Rscript/rscript_differential.R
935b1e47fb3f23ac4b782cbbf9564edc *extdata/Rscript/rscript_differential_chunk.R
fa3459267587c327db21dc25aa76e554 *extdata/Rscript/rscript_differential_wrapup.R
0b54f2a57f025434dbfac9fa788a080d *extdata/Rscript/rscript_exploratory.R
19ed9d0d2829d9195c5d73de5db1775a *extdata/Rscript/rscript_import.R
adf8ea74a792921ba25dcfcc29c885c4 *extdata/Rscript/rscript_inference.R
b5ed2de63f9db85bcf4fb47b42cd40b4 *extdata/Rscript/rscript_preprocessing.R
f5b5b4a9776718aa147a0469546f6d7e *extdata/Rscript/rscript_qc.R
6181e48f56b28e647fe5c4e2da9565d0 *extdata/Rscript/rscript_tnt.R
cfdc13c8b84d7f8cc4142af657b19252 *extdata/Rscript/rscript_wrapup.R
7f705d4b0cbcff70b47206c3f47cc4dc *extdata/arrow_down.png
0c41d0e6d903e8e9f74d8ec21e7a80fb *extdata/arrow_right.png
dc7ff27fc17f4e9a9ddf90732554524e *extdata/dna.png
3ef623d8206d0aa0a5d6962d63e03632 *extdata/optionProfiles/450k_full.xml
be2d167a15f70108c95f048fff7147dc *extdata/optionProfiles/450k_minimal.xml
91e5cce87d633ea416a7e106f11b7dac *extdata/optionProfiles/450k_moderate.xml
0922b778ac7f0f936c6564bdeff51afb *extdata/optionProfiles/bs_full.xml
f356459609156bee1f6101e759625381 *extdata/optionProfiles/bs_minimal.xml
f645cd8a6e1e5d715ceec957ea5f82bb *extdata/optionProfiles/bs_moderate.xml
5faad362322dee551e67cf9456b9bd7f *extdata/option_desc.tsv
2180932b6499e47bf3d6808128ee0c79 *extdata/options.txt
390cee2540983e2aad92a894c2ca477a *extdata/pdf_active.png
7dfc518ef8792382f5a45f10661486a8 *extdata/pdf_inactive.png
c3a4a8c8dd9f5351dee3a5c56ff80b58 *extdata/predefined_predictor_27K.csv
e7ee5e1312bddc51933bfbc5b10057bb *extdata/predefined_predictor_450K.csv
058d404cf6958a0b944aa19f0e215adc *extdata/predefined_predictor_Biseq_hg19.csv
433404da2a4b977feee0aca13a97c929 *extdata/predefined_predictor_Biseq_hg38.csv
058d404cf6958a0b944aa19f0e215adc *extdata/predefined_predictor_RRBS_hg19.csv
433404da2a4b977feee0aca13a97c929 *extdata/predefined_predictor_RRBS_hg38.csv
0b01a5fb0eb080ea4dab910a47e49912 *extdata/remc_metadata_2013.tsv
9b96573bc3c19398f2bdce7d83d5a66f *extdata/report.css
c8b8b3250b67eedb5985a3a91a4ee732 *extdata/report.js
01449c831a3a50406efd2ecb29446f41 *extdata/reportDescriptions.txt
642e36988035264e80236b093fa1d621 *help/AnIndex
113b1c237dac836ba15c156510202949 *help/RnBeads.rdb
ad0112cc68b94646f74ee0942fe91ee0 *help/RnBeads.rdx
281527fcfcb64c7e74e6e298a8d877bd *help/aliases.rds
bc33628d44bce113ab1334bb47519500 *help/paths.rds
7e0714027cee9e8fbf39e9c3766a1e5a *html/00Index.html
434307af25a39450f19fa78dc0002098 *html/BMIQ.html
f5c310699bf88b64b10a53801047309d *html/ClusterArchitecture-class.html
f01ffa968b8b8c8a1bd51191f217f8f2 *html/ClusterArchitectureSGE-class.html
3889bf9e10922a387deeaf853696f0ff *html/ClusterArchitectureSLURM-class.html
41ed36ec858684380eafa900dc9962aa *html/M-methods.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
11cf0af5e4695b12373f4421dd315b08 *html/Report-class.html
43701a85762b2bf38776ebd28b35d2db *html/ReportGgPlot-class.html
924a631b070f75621f64015ffdef6fe5 *html/ReportPlot-class.html
b00c35bfbd12ed906ca2bc253b3c9645 *html/RnBClusterRun-class.html
7d1705b1c8d19736960084108d7d294d *html/RnBDiffMeth-class.html
413750ee128293c2b825052326b1a2fb *html/RnBSet-class.html
dca49c2b5134e162a8b3077e9bd2e594 *html/RnBeadClustering-class.html
c2aea369e0cd7557c0e71848f15acc40 *html/RnBeadRawSet-class.html
9c4ee513a7fb662304b469b2dad8ee72 *html/RnBeadSet-class.html
180e47929f49c0e6695a1bd83c63d47a *html/RnBeads.data.html
927da9fc2178ec6b165238d112d59bcb *html/RnBeads.html
e3c47eff6a566c5edd1f67dca4467539 *html/RnBiseqSet-class.html
1274797c623ce255b743a0e893dca463 *html/U-methods.html
acd984f9595f6def8504b02989feb3fd *html/accepted.html
65984ede9e4ebfabf99f8a7f4c80eac9 *html/addDiffMethTable-RnBDiffMeth-methods.html
068c76c3b974ad61a0570b3654fa3991 *html/addPheno-RnBSet-methods.html
84756447f591bd704cadaf0e2d612658 *html/addRegionSubsegments.html
c843e91d30b24fdf0ece07cfe6699340 *html/annotation-methods.html
0923389b18102a9c0c300e959a30f6ad *html/apply.iEVORA.html
a4636850fe36cdad6ae256978b1c8522 *html/as.RnBeadRawSet.html
181d164cf2e3f8fac98ee65a4a79bcb6 *html/assembly-methods.html
1fffc071de1336efbaac43109cf41819 *html/auto.select.rank.cut.html
d780ea0d2366de37e907de65d230949e *html/coercion-methods.html
abf03f96d3b95f98812fd67c09e385c4 *html/cols.to.rank.html
95af49decff9d6387018e277d4efd781 *html/combine-methods.html
7fcb931ff802170b24df433033d293ac *html/combine.diffMeth.objs.html
ce9f328035ed62f3128b5e1300214bcb *html/combineTestPvalsMeth.html
408fbe3d02c8b6f9dcfd7fb0e7ff9e99 *html/computeDiffTab.region.html
ba2aa519bb979d3c2edabd216577eefb *html/computeDiffTab.site.html
970f5893966ec35972e536186be4c0ff *html/covg-methods.html
111e3a997917b8f48ae4e458f6747a93 *html/create.densityScatter.html
8cfca2bc059f0dea88957c172afe4d07 *html/create.hex.summary.plot.html
0d56db42eb480ac145bc0c1fc96ff928 *html/create.scatter.dens.points.html
b6d6c7824aac423debeddc664b9a11cc *html/createReport.html
423e46351e8308aece6972bbe0b3eae4 *html/createReportGgPlot.html
a7f009f3d886fbb9ff754da7aaeb5702 *html/createReportPlot.html
b6b2d7d362a2a49245eab5782f2883f7 *html/data.frame2GRanges.html
72073a688dc3837974a22eafd018b1d0 *html/densRanks.html
f6772b95ade01704d2bc2350361a0256 *html/destroy-RnBDiffMeth-methods.html
2d17eef7c9d97d11d2baf586187859cf *html/destroy-methods.html
011d4f9040fc67d05e1ffceefecd049c *html/deviation.plot.beta.html
37de962b40c52820f0e75da9a692fbd3 *html/diffVar.html
6a2b99a1ff9de6b1d7b585cc4793a201 *html/dim-BigFfMat-method.html
8c1584a523fbf03cd1d988c600d1e7e4 *html/downloadLolaDbs.html
db6eea2ab7d3e6bfd8b19e8b65fbd27d *html/dpval-methods.html
c5646f38b92f69b4c70da8317bb4a7e1 *html/estimateProportionsCP.html
7200025d488b881aec8994bdecbde252 *html/exportDMRs2regionFile.html
e3ac9d3804d32cd1bffb0d07e2101e2a *html/get.adjustment.variables.html
5a7ef58c3e5c58bf16e0dbdfec69cff6 *html/get.comparison.grouplabels-RnBDiffMeth-methods.html
4c7478f4b330b4c6ada039f9abae64d4 *html/get.comparison.groupsizes-RnBDiffMeth-methods.html
c8a8a25da36cb761b81037c8c69fe83b *html/get.comparison.info.html
5908e1727024f88e4076ff700710f14a *html/get.comparisons-RnBDiffMeth-methods.html
7c77fad24e1217c9f486b83f66c2e052 *html/get.covariates.ct.html
d5679cb007686dbcbbee0fb0b2772c3a *html/get.covariates.sva.html
2b8ec978c4b4beaf114d6eb5a54a99c5 *html/get.covg.thres-RnBDiffMeth-methods.html
5fc5bdfff89448037942768f1bffae0c *html/get.cpg.stats.html
607f7b3a1806b8e0d107e10d6ee08ccb *html/get.files.html
c57aacddb716a69e0d97c95086871a14 *html/get.region.types-RnBDiffMeth-methods.html
832d3bb241b41b66b050e9b09a24f5d3 *html/get.site.test.method-RnBDiffMeth-methods.html
35d22a54e74857493763075d422feaf8 *html/get.table-RnBDiffMeth-methods.html
39d93444875d737029fb5d2fb409351c *html/get.table.ids.html
a422b84812474576ab7c955744b0efae *html/get.variability.method-RnBDiffMeth-methods.html
46ec5dae1f9bbbc9cc7247d757a24a33 *html/getCellTypesFromLolaDb.html
52181bcb09f772b892d9c5296a92e1b4 *html/getExecutable-ClusterArchitecture-methods.html
320a7eedfaf7dfe58aaa84d150699bcc *html/getModuleNumCores-RnBClusterRun-methods.html
a73c5c898e25be9842d44c2319c9730b *html/getNamesFromLolaDb.html
f177c7bfc381ad4fd6ce94da032975ae *html/getNumNaMeth-methods.html
7aeb9a69f2a6837e1a8c1dac1af63508 *html/getSubCmdStr-ClusterArchitecture-methods.html
f2b71cb4e9edd73af0cff7c5324ecbe2 *html/getSubCmdTokens-ClusterArchitecture-methods.html
26645da8ed36a54ddf12824f10cc7dc1 *html/getSubCmdTokens-ClusterArchitectureSGE-methods.html
98c316c934587649b9684c40b589130e *html/getSubCmdTokens-ClusterArchitectureSLURM-methods.html
f796882beac2bbe27738b4f150657d7d *html/getTargetFromLolaDb.html
da4ad121f59b20cadb537c45620e1ade *html/greedycut.filter.matrix.html
7797693781f58a94f46bd250436e1e05 *html/greedycut.get.statistics.html
a84ebbde4e886b4e547aa38851534042 *html/greedycut.get.submatrix.html
ee141ecfa6d962b845d48edbf797b8c4 *html/has.covariates.ct.html
b7cb66075d530fbdd23ae07d1f93481f *html/has.covariates.sva.html
1fe0c1f4fffa323ee490b1c9a8bcd7eb *html/hasCovg-methods.html
11f3607eb2fb6a91501b9463460556a4 *html/includes.sites-RnBDiffMeth-methods.html
e78cf90b3bc50846b232caca4730bd5a *html/initialize-ClusterArchitecture-method.html
13d9b2170f676c4e433b6b4bd10e7de3 *html/initialize-ClusterArchitectureSGE-method.html
840ec1b5845de8af724de004e649ad43 *html/initialize-ClusterArchitectureSLURM-method.html
1afdf52cf58155e1890c6ecb51477e9b *html/initialize-RnBClusterRun-method.html
ad569766b48003521f7ee86e71dc4e24 *html/initialize-RnBDiffMeth-method.html
f2480fa91db01aa3783a6f57b2a38e75 *html/intensities.by.color.html
4cbac145e7832ceed0a6b48b3a32fc56 *html/is.valid-RnBDiffMeth-methods.html
7b763ffbc30066cef85930757a132626 *html/isImputed-RnBSet-method.html
6f2f4c4fb7cd2926e9eabf33e2df4f26 *html/join.diffMeth-methods.html
6c100dddef00bd8e97a01b23186c6e84 *html/limmaP.html
ef497fed8eea68541f09a0ef9e83a875 *html/load.region.subsegment.annotation.html
6735b7bcb35b82dce8053dcd711b8129 *html/load.rnb.diffmeth.html
0d1e770908d0e931f79a8f8796759c72 *html/load.rnb.set.html
1a51254171989edf40e5ab79497e6789 *html/loadLolaDbs.html
a963cd81a8e4787c57e98937344c63e2 *html/logger.argument.html
95a61eaeacdf9c08aaa2a374ffeb1565 *html/logger.getfiles.html
67b289cf7fdd5a0ce2d87ca2ebc87ee9 *html/logger.isinitialized.html
95c693ff387a1631744e2d546c12f0bf *html/logger.machine.name.html
ed481510bfaf6c67e98fe762fbde7ec9 *html/logger.validate.file.html
8ef4d66cdb97cc1757762f83846b36d2 *html/loggerManagement.html
2bea56df0e23ac5c6cc2edb4b1107911 *html/loggerMessages.html
7f10d8d84dd2c4a852fda9d98ba12eee *html/lolaBarPlot.html
8d619fdf4cd2778b1ff67a1aa22d315d *html/lolaBoxPlotPerTarget.html
20583281298a09c53d6455b1f3e8f347 *html/lolaVolcanoPlot.html
6bc0b0689a42967a7299b3015d56e5d8 *html/lump.hg19.html
4c92fae3c0f514a40ace9937c71ce851 *html/lump.hg38.html
101be2d71dda262c17015b224dae4579 *html/mask.sites.meth-methods.html
5c287d759765abc0d0ac68aca6c286b7 *html/mergeSamples-methods.html
668e5122391a4a1f1a208985104e4d79 *html/meth-methods.html
08ff00a7a0c24b2c56550bcdd90a354f *html/mval-methods.html
4a9ca3c0bad70a37c546201b364bf1ef *html/nsites-methods.html
3243f75204438cbb7a12a14ab495d43d *html/off-methods.html
1ca4817ba72f225c9bd377c210e7e994 *html/parallel.getNumWorkers.html
fb307e9d5f325780a320e982df62c30a *html/parallel.isEnabled.html
af9188b860d3b264fed7ed990e58fa7f *html/parallel.setup.html
8a6296cc8ffc59280a61956d5753d493 *html/parallel.teardown.html
722eb29123b7102479df67e42bffb408 *html/performGOEnrichment.diffVar.html
dc74066a80d422fa271397c555f84346 *html/performGOenrichment.diffMeth.entrez.html
80c39d66944a8b96472deaa0bc79f039 *html/performGoEnrichment.diffMeth.html
babccf54cdda67d8c00d3d2e0fe91063 *html/performLolaEnrichment.diffMeth.html
08bc87ed8f1a79b3069816e566399527 *html/performLolaEnrichment.diffVar.html
d86d4a6e4ee322844b0660ae2c7e4194 *html/pheno-methods.html
4c9075a7b35af2e41e7c9c6f62d13ad0 *html/prepareSOFTfileForGEO.html
f8ea1f08154dca4f4ff32226444eb091 *html/qc-methods.html
45f95e35b301f634385eb7c000d7cd5a *html/read.GS.report.html
0385c77a6c69520c8b1af025f59bae25 *html/read.bed.files.html
6a942a4d09b1e44b51fe00ce4bd74e53 *html/read.data.dir.html
7411385118bbab28d5d147b43263f7f4 *html/read.idat.files.html
ddd420c02b3e5f9a2888f121e15b5b64 *html/read.idat.files2.html
0fa371461d850c0260739cbf80bbc984 *html/read.sample.annotation.html
0dfd076c3c6111b146126bda72a6131b *html/read.single.bed.html
e7aed06d668a9b55f584be2830652fca *html/refFreeEWASP.html
2ca755b77db2edca7da6a4455cb380f9 *html/regionMapping-methods.html
4307754f9d9fd418e5857ff51f405c48 *html/regions-methods.html
46e62e1a0dc8f70e85518dd21f7b9775 *html/reload-RnBDiffMeth-methods.html
a2e3d1fcd96d4635fe0048e6c279ffae *html/remove.regions-methods.html
431daa217511775f61f3990c949ed3f8 *html/remove.samples-methods.html
29e8a53d4f61edb5f9526c83c6bea244 *html/remove.sites-methods.html
5dbe54dd8ef6c007e81e1b2cf5518390 *html/rnb.RnBSet.to.GRangesList.html
b1b0c686ed7c13945bc43b75f819c158 *html/rnb.RnBSet.to.bed.html
d3bc1317c4c8fe778afef757888f94ee *html/rnb.RnBSet.to.bedGraph.html
1c858076485cdd599d584af6371badc0 *html/rnb.add.figure.html
ed7adbac90a7072d2c34cb44d7bdae11 *html/rnb.add.list.html
0a44c83a97c538852477ae0fe501b06b *html/rnb.add.paragraph.html
50ba865654220b710482fc28bb7f4b82 *html/rnb.add.reference.html
768561e5f6428c5a7d77c6aeef4ab1a7 *html/rnb.add.section.html
3609b6b7833786551dfe178512c4563b *html/rnb.add.table.html
49dfc84718d26810f4f33dba6a544228 *html/rnb.add.tables.html
210faa5c97602ee6cfe332e8619260c5 *html/rnb.annotation.size.html
7aa13efbcbac4688a4a09aebd1c1b053 *html/rnb.annotation2data.frame.html
67ed9676f0ed335fd49b3dc19aa7354c *html/rnb.beta2mval.html
e794811cd3c038ae300699713a5481ac *html/rnb.build.index.html
5fd62a7b0240df049e0fc10b42b79fd6 *html/rnb.call.destructor.html
162632dc74b5aec2366bfdf91cce287b *html/rnb.color.legends.html
e490e29054c8c51ec9c665475c2c2fdd *html/rnb.combine.arrays.html
761d248ebbc37ea8e6725807da4ae0f9 *html/rnb.combine.seq.html
7fecb6a81974425f3ec9336dca626bb5 *html/rnb.execute.age.prediction.html
5c5744289fc169335a7e678bcb232c1a *html/rnb.execute.batch.qc.html
12acc8bd2cb22c25b3391fd940610276 *html/rnb.execute.batcheffects.html
51e8bec34dcbc6a2f2fade1fc923021c *html/rnb.execute.clustering.all.html
5e45a801d7e3ed93890daeead8e4f300 *html/rnb.execute.clustering.html
0e86eb8e2715df14615e6560fd6161ca *html/rnb.execute.computeDiffMeth.html
7fc5c5d7da956f285e2d792cd087603e *html/rnb.execute.context.removal.html
70f2865094c893c34bfccdc6f8f16909 *html/rnb.execute.cross.reactive.removal.html
cfc18dc25e55402a6b678a00d7d9a9d4 *html/rnb.execute.ct.estimation.html
d2e5cdaeb25bff0ce69a6e161440591e *html/rnb.execute.diffVar.html
9391917b8b982c50168dac0aca483858 *html/rnb.execute.dreduction.html
7802d481882efcfc3d205cb5ad5afded *html/rnb.execute.export.csv.html
5fa579cb5776e98c3f5bb1ef872f3396 *html/rnb.execute.filter.summary.html
1b84e5461bf2fbb565dbac3f16deb90b *html/rnb.execute.gender.prediction.html
6f3e768b90ae7b6adfdbf33faec56c7c *html/rnb.execute.genomewide.html
d34263a42f0ee0b272ee7a3bed126b63 *html/rnb.execute.greedycut.html
ce18f94ea902be046762fdf7a13d0068 *html/rnb.execute.high.coverage.removal.html
67e2fbe63e96ed515d7c881f035b62dd *html/rnb.execute.import.html
3750e86515fcf8346318fe7723a86db5 *html/rnb.execute.imputation.html
0a7005d250cec52784c44b1d6e324ca9 *html/rnb.execute.low.coverage.masking.html
5a9dcd0b706f9cec8a93ec8213516839 *html/rnb.execute.lump.html
3007f018b12435b1066be3fac9847587 *html/rnb.execute.na.removal.html
2d01a9f3c8e51820074c932045af5fe3 *html/rnb.execute.normalization.html
21f70b7a08c7cf3295bf446782a1a612 *html/rnb.execute.quality.html
97dad43242a102adadd5e56167ea1b5a *html/rnb.execute.sex.prediction.html
14d0b4a8d863312268ebaddc7e3313da *html/rnb.execute.sex.removal.html
48dcefc876d995270c9c11ba2976d899 *html/rnb.execute.snp.removal.html
afdf095e2ea9c5b0c20de57a87d29773 *html/rnb.execute.sva.html
5ef9eb2b643fba9ba59f8b7e882f2d61 *html/rnb.execute.tnt.html
17751253dc0e397776502de0f02b7a20 *html/rnb.execute.training.html
0d297a7e0361ca29a07f473ea0c71102 *html/rnb.execute.variability.removal.html
4a9cc28a81d9364080a18acb18ca4e7b *html/rnb.export.all.annotation.html
81a17aad708ea97447fb926e37b75ca3 *html/rnb.export.annotation.html
3b850308da37f9354feba5772cd73106 *html/rnb.export.to.ewasher.html
06adb0e07c255b414639df435785b53f *html/rnb.export.to.trackhub.html
7ad80a5b40fb2eb7fb406a9fbfc940ec *html/rnb.find.relative.site.coord.html
fb4b9a10452b10bde36de0b4ce68dd85 *html/rnb.get.annotation.html
aa636e102b1fbbf5c39b871482dcfb5b *html/rnb.get.assemblies.html
23ae02b22a3ed9bfd49c8d41838bf368 *html/rnb.get.chromosomes.html
f3567ac298330ceea7f2dcf71513d5c5 *html/rnb.get.directory.html
e6f8c165ca1611418e3d09514e84f121 *html/rnb.get.mapping.html
71d967270025c944b4ae7c85477a1f9d *html/rnb.get.reference.html
779145a766fc55136b66279f9886322d *html/rnb.get.reliability.matrix.html
1bac96635308f6e58e0c060c09c55b57 *html/rnb.infinium.control.targets.html
7f1b568d6aa2ea95b1430e7601ea9cb8 *html/rnb.initialize.reports.html
f3b4fa3ea7a26a88cbf52dd4896e4e08 *html/rnb.is.option.html
832743ba17655133224a3bc0b8d02fce *html/rnb.load.annotation.from.db.html
767ee6389918a766a5344f55e649e030 *html/rnb.load.annotation.html
da22c0b3cd7e803c3e3c30d2466accd3 *html/rnb.load.sitelist.html
401dc04f255d6bb827c5894e4be2890a *html/rnb.message.plot.html
a143945030185535f6078b893060bdb8 *html/rnb.mval2beta.html
dc132e88754fd825888ec83a80d5d304 *html/rnb.options.html
c4871948664dffd7574850e5da548a98 *html/rnb.options2xml.html
b85afb25debd4b4c5b8dd198b9840e0b *html/rnb.performance.profile.html
8e4554b4c704c66f28010f84ac854c81 *html/rnb.plot.beta.comparison.html
e4aec2a667ffabd19c00fc1f4a3b2839 *html/rnb.plot.betadistribution.probeCategories.html
1163c91b4d30a3e76046adc0eb3bc5f4 *html/rnb.plot.betadistribution.sampleGroups.html
e717de48c5b230573f911c786c5f7cbb *html/rnb.plot.biseq.coverage.hist.html
549c3affa3e766dc7c7f52253433e028 *html/rnb.plot.biseq.coverage.html
7173449a761792e24608ba0f94dd480e *html/rnb.plot.biseq.coverage.violin.html
94637bcafaf36d582789a38f8347f63e *html/rnb.plot.control.barplot.html
b3e45daf56074ff19b4b7c10cee82d29 *html/rnb.plot.control.boxplot.html
1a0b06cf73764315a5d8a3f73b16a86e *html/rnb.plot.coverage.thresholds.html
a154e47c412e87a0de7cad5ca7fc9950 *html/rnb.plot.ct.heatmap.html
d0b86a0b5b1b450f14fa02c7a6e4e571 *html/rnb.plot.dreduction.html
a61995fa0dd29a61528140ead6454333 *html/rnb.plot.locus.profile.html
30c480c65280ae50878bf03ccd5549c1 *html/rnb.plot.marker.fstat.html
8988dc1a90032e675e203886c4859e62 *html/rnb.plot.negative.boxplot.html
d75a301f8f47c786a52a475b1c148c5a *html/rnb.plot.num.sites.covg.html
34e57846af62010c23aeefe1ac02d5ca *html/rnb.plot.pheno.categories.html
917d5ba1d5e1d8c83fb4daa2bd4d7cf5 *html/rnb.plot.region.profile.density.html
67718cc76772329bc380cb67290473ff *html/rnb.plot.region.profiles.html
61fb59c0479f3beb8516aad457226045 *html/rnb.plot.region.site.density.html
d8e4ec6922eb9d837e86cdac4e011bc0 *html/rnb.plot.sentrix.distribution.html
737288c816ed3752f8a3ea01d3aec225 *html/rnb.plot.sentrix.distributions.html
aecc0eeb9448c6836a897f70a3ab5e4a *html/rnb.plot.snp.barplot.html
bf09f1cc0266ff5e426caa7ad8f33ea5 *html/rnb.plot.snp.boxplot.html
4a3b4ea49b1650b6a5eb29ebd531dca8 *html/rnb.plot.snp.heatmap.html
95c5dcf401bc4fd25b3988d43db2e0e1 *html/rnb.read.geo.html
dc884154e76163a2a3d9e4bfafa36d31 *html/rnb.region.types.for.analysis.html
df63113453d8caf318a383e2f0aedb45 *html/rnb.region.types.html
7a8c791f120105540bea1aaeafeb7d70 *html/rnb.remove.annotation.html
80e42dea3776f9dec1889d3362bcea64 *html/rnb.run.analysis.html
d7ace46e6ebeaeea84855c358e3e4f2e *html/rnb.run.dj.html
1eb91742a92180baf4261350cc6bf36a *html/rnb.run.example.html
5f80c159eb646944e7fa76519f7ea444 *html/rnb.run.xml.html
370704240b060b892b5bc752c0572208 *html/rnb.runs.html
78b44b258cfbad9e6b6e3b8ab9e708e3 *html/rnb.sample.groups.html
0b3fa6b75bfec8b07cebd691d02d5c93 *html/rnb.sample.replicates.html
d4eb7dac5ffaff4c8da0e48d66ff3ca2 *html/rnb.sample.summary.table.html
630a741f34ae83290cc92b232baf7df9 *html/rnb.save.annotation.html
757f938d1999249c06d163762fb6ccf1 *html/rnb.section.diffVar.region.html
c597800602d08787297ccb57c2642255 *html/rnb.set.annotation.and.cpg.stats.html
909936ec1a8c7c13ff54d2244e0082de *html/rnb.set.annotation.html
4c77aa3f6b523d6b952e77e075eb3092 *html/rnb.show.report.html
84560454b895feead9d6a9b60876725d *html/rnb.step.betadistribution.html
3950c9237a2949fc82a369e8dba3f086 *html/rnb.step.cnv.html
7c634a72df526eea1dfcaf286f59b9ac *html/rnb.write.table.html
fff496244380cdf1fc06f3eb6204af35 *html/rnb.xml2options.html
df6fca6f2e6262f418b5139c6919cd2b *html/rowOneSampleTP.html
c9bdcf6594851de52d51926ae4febaec *html/rowPairedTP.html
ecfaed4a1e62250bd0a4a10e13e97f49 *html/rowWelchP.html
1a2fdbc0245b5c6daaed14148d954f31 *html/run-RnBClusterRun-methods.html
fdfd9fe8e8146f0dee07ba898c57e87c *html/run.cross.validation.html
108230f79924021d8b8ba75f6335e5f8 *html/sampleCovgApply-methods.html
bf4ebacdf6859c0d3ff9bc2d0939edf7 *html/sampleMethApply-methods.html
ec8232dd523a314e68421bb9c07fd498 *html/samples-methods.html
059047d0af3f3cf0c0389ddb4e71a210 *html/save.rnb.diffmeth.html
37606c1f5c9213061aa22d3fe15952d0 *html/save.rnb.set.html
ae0f93c3f871edabfc91b73da7ceb421 *html/save.tables-RnBDiffMeth-methods.html
0be2e2858688c9673d53579b49c97bd3 *html/set.covariates.ct.html
60c11bb22daa6567e49b49e3ef849be6 *html/set.covariates.sva.html
793684428040af095bf9a272141fdff1 *html/setExecutable-ClusterArchitecture-methods.html
e3e5af710b38df63fd922fd840c31706 *html/setModuleNumCores-RnBClusterRun-methods.html
196078f5791b2bd5de271d64a8025775 *html/setModuleResourceRequirements-RnBClusterRun-methods.html
c128e980704bc85d6a05de1c35e90ee3 *html/sites-methods.html
90a6c3800301035ef7088a87f5bf1ea1 *html/sub-BigFfMat-ANY-ANY-ANY-method.html
8a8cb0da952d35baede8d50ed3873e45 *html/subset-BigFfMat-ANY-ANY-ANY-method.html
f7f3e7132f2a42fee1daf2e597c974ff *html/summarize.regions-methods.html
2f413963979dc33b21c5930820bd09cf *html/summarized.regions-methods.html
894cbddcf31dde47b257f792fdf43a4e *html/updateMethylationSites-methods.html
78b61fc93f4dc4b1a5f41efec5bee81d *html/updateRegionSummaries.html
98d3f80448adb56c12dc3c4ece7c8c65 *unitTests/dataset_generator.R
2b74d5cf6809cf8e5ac78c027088f7ab *unitTests/test_differential.R
43259f9d8f495933e7a071989956d654 *unitTests/test_logger.R
224164c3ce7e7541734049d64e4796e7 *unitTests/test_others.R
db17a9f2843cebb385c1cc4516642bbd *unitTests/test_report_1.R
6666acb5776661387dcd746e807d3c71 *unitTests/test_report_2.R
97672949f47ca745bd23e295a6e72e98 *unitTests/test_report_3.R
