rnb.set.annotation.and.cpg.stats {RnBeads} | R Documentation

## rnb.set.annotation.and.cpg.stats

### Description

wrapper for `rnb.set.annotation` to accept the region format as output by `annotation(rnb.set)`. Additionally, CpG statistics are added to the annotation.

### Usage

    rnb.set.annotation.and.cpg.stats(type, regions, description = NULL,
      assembly = "hg19")

### Arguments

`type, description, assembly` | Parameters handled exactly as in `rnb.set.annotation`
`regions` | a data.frame handled similarly as by `rnb.set.annotation` with the exception that the genomic location columns should be specified using upper case first letters

### Value

Invisibly, `TRUE` if an existing annotation was replaced and `FALSE` otherwise.

### Author(s)

Fabian Mueller

### See Also

`rnb.set.annotation`

[Package RnBeads version 2.2.0 Index]