rnb.execute.high.coverage.removal {RnBeads} | R Documentation

## rnb.execute.high.coverage.removal

### Description

Removes methylation sites with a coverage larger than 100 times the 95-percentile of coverage in each sample.

### Usage

    rnb.execute.high.coverage.removal(rnb.set)

### Arguments

`rnb.set` | Methylation dataset as an object of type inheriting `RnBiseqSet`.

### Value

`list` of two elements:

`"dataset"`

  The (possibly) modified dataset after retaining sites on autosomes only.

`"filtered"`

  `integer` vector storing the indices of all removed sites.

### Author(s)

Fabian Mueller

[Package RnBeads version 2.2.0 Index]