read.GS.report {RnBeads} | R Documentation

## read.GS.report

### Description

Reads in a Genome Studio report, exported as a single file.

### Usage

    read.GS.report(gsReportFile, pd = NULL,
      sep = rnb.getOption("import.table.separator"),
      keep.methylumi = FALSE, verbose = TRUE)

### Arguments

`gsReportFile` | location of the GS report file
`pd` | alternative sample annotation, if the `gsReporFile` is missing the sample section as `data.frame` of `character` singleton with the file name
`sep` | character used as field separator in the sample sheet file and in the GS report file (should be identical). Default value is taken by the call to `rnb.getOption("import.table.separator")`
`keep.methylumi` | a flag indicating whether the a `MethyLumiSet` object should be returned instead of a `RnBeadRawSet`.
`verbose` | Flag indicating ifthe messages to the logger should be sent. Note that the logger must be initialized prior to calling this function. Logging is useful for keeping a record of the downloaded and processed samples. Also, informative messages are stored in case of an error.

### Value

MethylumiSet object with the data from the report

[Package RnBeads version 2.2.0 Index]