getAnnotatedDataFrameAssay {Risa} | R Documentation

## Retrieves an AnnotatedDataFrameAssay.

### Description

Retrieves an AnnotatedDataFrameAssay.

### Usage

    getAnnotatedDataFrameAssay(isa, assay.filename)

### Arguments

`isa` | An object of the `ISAtab-class`.
`assay.filename` |

### Value

An annotated data frame.

### Author(s)

Alejandra Gonzalez-Beltran

### See Also

`ISATab-class`, `AnnotatedDataFrame`

### Examples

     faahkoISAzip <- system.file("extdata","faahKO-metadata.zip", package="Risa")
     faahkoISA <- readISAtab(zipfile = faahkoISAzip, path = file.path(system.file("extdata", package="Risa"),"faahkoISA"), verbose =TRUE)
     faahkoADF <- getAnnotatedDataFrameAssay(faahkoISA, faahkoISA@assay.filenames[[1]])
     str(faahkoADF)

     armstrongISAzip <- system.file("extdata","ARMSTRONG-S-3-metadata.zip", package="Risa")
     armstrongISA <- readISAtab(zipfile = armstrongISAzip, path = file.path(system.file("extdata", package="Risa"),"armstrongISA"), verbose =TRUE)
     armstrongADF <- getAnnotatedDataFrameAssay(armstrongISA, armstrongISA@assay.filenames[[1]])
     str(armstrongADF)

[Package Risa version 1.26.0 Index]