80857d043e3b55271cb91476386cd4c3 *CITATION
a77247fff3d671125de6dcebb5708847 *DESCRIPTION
9de12d1faf0e186d8b0cd4fd885aee44 *INDEX
fbab3def1fc522faa19fda3b6417ad62 *Meta/Rd.rds
25ec83abd15128a8ae9185d893802c45 *Meta/features.rds
daf0c7bc99b8772fe21968a74c9ca275 *Meta/hsearch.rds
e842fe7dfdf989c58ea5e26e69af429f *Meta/links.rds
1a5409c33a2db45cad55f0612f874419 *Meta/nsInfo.rds
d021d0b1e312292e6428866b1fbf52d4 *Meta/package.rds
4110ec1506c84c6c8041b4a349ebcd95 *Meta/vignette.rds
35a79ab38dbab6e7c79b676116a4aff8 *NAMESPACE
ebf0fc819595d631b8bf280c4b049940 *R/Ringo
7824b84bd7f889ea246d55868720c6e3 *R/Ringo.rdb
99e2b7c5b3b6983e63339eb96a92dc0e *R/Ringo.rdx
089e29bd75b0820e1f9801c950320f65 *agilentData/H3K4Me3_Tc1Liver_sol1_mmChr17_part.txt
5415524a104b5816a944f4971595d5ec *agilentData/arrayDescriptionAMEXP1029_part.txt
5a2434a37ee75088c3af5efcccc5240d *agilentData/mm9chr17.RData
c5eb37db0745300dbd8bb02ee3ff18e1 *agilentData/targets.txt
ac8b5e5600b8749e7c2f5bd1a84d616f *doc/Ringo.R
3839816a13a162c65bbab97c7a0986a5 *doc/Ringo.Rnw
126875bbd751b96210194bcebca81788 *doc/Ringo.pdf
18fbaa454af6ec37d30f1798fedc3716 *doc/index.html
b8ad09fcb16b97300782f378c5505754 *exData/MOD_2003-12-05_SUZ12_1in2.ndf
93dcafa177f6105c8602c097f9b79b98 *exData/MOD_2003-12-05_SUZ12_1in2.pos
fe86e5c1cf343c486c4985a9e5a427b8 *exData/MOD_20551_PMT1_pair.txt
3f7ebd178b21eaf7d160d607a2e42ef4 *exData/MOD_20742_PMT1_pair.txt
8e164612155b94980a9cb3b9b7a148cb *exData/README.txt
f39530a6d35b8a18e8dd075205b37bd3 *exData/exampleProbeAnno.rda
b1f0e9e8dafc00780930776bfd6e9aa5 *exData/exampleX.rda
8455900bba7d71a31bbcffdbece9420e *exData/example_targets.txt
4bb3efa4b569917acddee6e3d9d5db33 *exData/reportersInexactMatchesHg18.rda
d020c2bea3ee4cc5de50e947df20e391 *exData/spottypes.txt
6ec1bba00f10d458b6a04793e3e9a231 *help/AnIndex
39f57c86154254fbf038418795d79d89 *help/Ringo.rdb
77826e3a1507e0270a58d856d9fe81ae *help/Ringo.rdx
f1a7d6ec339f2ac7eadbea106e7094d3 *help/aliases.rds
4007e8dc1ba66ddb16cc3a567d6ead42 *help/paths.rds
fa3350bd4d71b54fc76eed555f23a5ba *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
f91e8b97ab97fc021c562acf5f203504 *html/Ringo-internal.html
d257ce3e7f07dbc799e806f6274c2357 *html/arrayImage.html
a51a5c3c578c0c72c1626f7f50940281 *html/asExprSet.html
e71b040bc7c11603b1db16ed31b9a640 *html/autocorr.html
ed1043094ac1d8085d2404a38b444a9e *html/cherByThreshold.html
8ad044d66759391dc67d95ef1e70ca15 *html/cherClass.html
a7d03661adf6cdcac59d5e3a7c6b2540 *html/chipAlongChrom.html
fe4fa43a7d15f7ab8ca9689f8c188ad1 *html/chipAlongChromOld.html
306ee551d03e41debe0c664dc6014680 *html/computeRunningMedians.html
45dc0e9d36658e67ff96c73167e34eab *html/compute_gc.html
fe10fd88e887833bbe4601f4795195a6 *html/compute_sliding_t.html
fed154a37e3633021e0fba2c9e997add *html/corrPlot.html
a99a48a5fba4dd0afb0b5bfb8a55127a *html/exportCherList.html
fe8c9a04d96e62ddcdc92bd651a83671 *html/extractProbeAnno.html
25cfe54a6375651fe10da199a15ae67b *html/features2Probes.html
1994d995c63068e7206e9f98f53987f8 *html/findChersOnSmoothed.html
b6b01c01abf1cf5e5c8fa052fc0573d3 *html/ftr2xys.html
86d16b442f5a9bf850b5d1d00b1fd155 *html/getFeats.html
de6aeae1d455fbcb43994eb571de62eb *html/newCER.html
8406644ffd6aa837438305459edf8138 *html/nimblegenNorm.html
ca81c8d331938348bc484bf585aded98 *html/nonzero.html
2d3b1a2b593ffb3a28df2ee6f935507f *html/plotAutocorr.html
db08639e1d7d3b79e23bc54d06905ad5 *html/plotBM.html
cbc00d9a61d5652d89c3af33e9176b22 *html/plot_cher.html
ea35e685bc9c52a0e0297901b712c5d3 *html/posToProbeAnnoEnvironment.html
d4379fceec9a8b2a8e1dae89904db030 *html/preprocess.html
547e98e3f72e1ac960f4ec7a97a4e8c3 *html/probeAnnoClass.html
90dd7a426a35e71dd75bc9902ffe7ce7 *html/qopS4.html
12cb1b07cad5b5de13402b39411bf566 *html/quantilesOverPositions.html
79d5e59eb85c8d77c148c56a0302a6ce *html/readNimblegen.html
e329d3a4ae72d8b2ea2511b7efec14ed *html/regionoverlap.html
f2a6332f4a5b187baa77bcd2f8a8ce8f *html/relateCERs.html
89f3bf1906f1d4736a43d94538b87ec0 *html/sigGOTable.html
29389f095404a090e1f20686c2b1b362 *html/sliding_meansd.html
c9aff3442de22352bd6d6d57f89d6545 *html/sliding_quantile.html
813cfb0889d606158bb745afa2c3ef57 *html/twoGaussiansNull.html
904a540103a5cb1794eb6e60697af176 *html/upperBoundNull.html
9069118df880c48ec011dbf03cb21249 *html/validProbeAnno.html
5722a604657bd57b39d0b38f3b278b9e *libs/i386/Ringo.dll
25d0680338fabe401dfa473d3664f890 *libs/x64/Ringo.dll
a4e348745bcee4d7022d2807ffd80359 *scripts/condenseBlatOutput.pl
26ace4b02da8e5d607f0566ccadc4e6a *scripts/condenseExonerateOutput.pl
ac0161dfde18540822564e99cdc6ae6f *scripts/condenseMUMmerOutput.pl
eebb5df013fcec9efeb3462c04cd9fb5 *scripts/convertSampleKeyTxt.R
abc83ca087b05944e99b736a18ec9cc0 *scripts/extractProbeSequenceFasta.pl
651d61b0dda52b6e924b69196870505d *scripts/graphChers2Transcripts.R
ed1c3d0e9bff0018ccf916c22a828c28 *scripts/makeProbeAnno.R
f69c0dd79ddeb4513eb72316c1a4b791 *scripts/mapReportersWithBiostrings.R
a97db632c7fe0facd9d1db343eeebc17 *scripts/retrieveGenomicFeatureAnnotation.R
