peRes-class {ROntoTools} | R Documentation

## Pathway-Express result class

### Description

This class is used to encode the results of the pathway analysis performed by the function `pe`.

### Details

The slots `input` and `ref` record global information related to the whole analysis, while the `pathways` slot records the specific results as `pePathway-class` for each one of the pathways used in the analysis.

### Slots

`pathways`:

  A list of `pePathway-class` objects.

`input`:

  named vector of fold changes used for the analysis. The names of the vector are the IDs originaly used.

`ref`:

  character vector containing the IDs used as reference in the analysis.

`cutOffFree`:

  boolean value indicating if a cut-of-free analysis has been performed.

### Author(s)

Calin Voichita and Sorin Draghici

### See Also

`pe`, `pePathway-class`

[Package ROntoTools version 2.12.0 Index]