109db95eb1b4072ab2573ee4f23ade1b *CITATION
ecf37c4ce85f627ce9b00ddac2c4163a *DESCRIPTION
48fd35a1dbd2ce02865d24d3071c51f4 *INDEX
45957d0b7affb348da134efb17adfdc9 *Meta/Rd.rds
25ec83abd15128a8ae9185d893802c45 *Meta/features.rds
ae476638d5ae75125185eebbce4f65cf *Meta/hsearch.rds
cd6b3e3d1638db59a097e1c238c31496 *Meta/links.rds
34e32d6e7c93c4564d8ae9814026766c *Meta/nsInfo.rds
71d1ea6e15754a0ce0930de5f7f73901 *Meta/package.rds
31ee42da9964f142f00860b185ade556 *Meta/vignette.rds
49d1d083664ad1d9722b293e2ee397d9 *NAMESPACE
df7259a15a2300b75b200810bffe7973 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/RIPSeeker
0fec4f05e5d23df34825d79b44e41694 *R/RIPSeeker.rdb
7e134b35f3b055490c58f16604c1d0dd *R/RIPSeeker.rdx
61951fe5d2ad133d3316e7e15d418f32 *doc/RIPSeeker.R
c782956ce9cd907ba4c4cc5d8830e930 *doc/RIPSeeker.Rnw
ed6b4dc86b25b0f473d024df30fe7472 *doc/RIPSeeker.pdf
7c6476d9948a7587e22e1c0c03f6bdd7 *doc/index.html
08bb4ffc1327175d17a9a8ee80ad5b29 *extdata/PRC2/SRR039210_processed_tophat/accepted_hits_noDup_sel_chrX.bam
f35733b0cf6b993aff491129f38ad123 *extdata/PRC2/SRR039211_processed_tophat/accepted_hits_noDup_sel_chrX.bam
2e30a92bc78458afcd3fee079c0da8fb *extdata/PRC2/SRR039214_processed_tophat/accepted_hits_noDup_sel_chrX.bam
67cd63da07d23897f58d794cca23dca5 *extdata/RIPregions/RIPregion_biorep1.gff3
bd9f4a81b7b3b6aac36c49083039e594 *extdata/RIPregions/RIPregion_biorep2.gff3
7df758adaaf5b6d487ac22e4dba6c31e *extdata/pairedend/ex1.bam
3c124ff06331bf53dc2222d882769f50 *help/AnIndex
c0a8dc04b5dabe79c795eb51b4898d0b *help/RIPSeeker.rdb
c6514ae5a3429f1d328fd2bf557a7634 *help/RIPSeeker.rdx
b0f6e7cee62ba5babcbaed1eca54d3a4 *help/aliases.rds
160ee11fa6aa75bd14add316539eeca0 *help/paths.rds
75e65ae7a75497c78403cf37ff8ac1e2 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
48361cfe916dda72700765179ea56eb7 *html/RIPSeeker-package.html
cd54617c9b263e8012b36567b591433d *html/addDummyProb.html
51a3cb23306595edd6ca4e6ce202395d *html/addPseudoAlignment.html
69f7a88c528f15b02402bbe33e3e725e *html/annotateRIP.html
a532f5dd7d2a7a2f057bdcc6e419e9e5 *html/binCount.html
8e21a0a7c5fd8210a71a141b3e7e05f8 *html/combineAlignGals.html
99eb65df38310bd69212d72a5f8b9c3a *html/combineRIP.html
94522861e99df7295fb017e4c0fda541 *html/computeLogOdd.html
6dcd62e8306e45d71d68162d435c4acf *html/computeRPKM.html
acfce625a33c07e47aa2895d95d0de53 *html/disambiguateMultihits.html
0e33d5ecca24d2a5845d4d5ac41db46a *html/empiricalFDR.html
4c811ae5177c7c841d626543f68b7c72 *html/evalBinSize.html
c0370d9bafb2e959c6ca9915035c516d *html/exportGRanges.html
d731f46f669e958c613c42546fddaa05 *html/galp2gal.html
81df2cd6df4bdca4c88eb99f091b931c *html/getAlignGal.html
27e8937235beae024fde4a67e657738a *html/logScoreWithControl.html
b9182139cd939337d64adaf3e72f0a4f *html/logScoreWithoutControl.html
5c62c0b6f08f75d5cb1493b2220aea47 *html/mainSeek.html
3bf2ae4bf850fcaa7b68d33d174101d5 *html/mainSeekSingleChrom.html
ba66de2a89964cb1f2db27703b464346 *html/nbh.GRanges.html
1b58c3b693d3064f8e6fd736d1cf6a7b *html/nbh.html
117091a48f3fd9c4ea57c571690c490f *html/nbh.integer.html
c6aa74a6cf61957469dad9a4f49e405a *html/nbh_chk.html
657ed9ff6645d0055484eb7a333ac220 *html/nbh_em.html
58ae4743cb046d7e355fab8e86e5ae9e *html/nbh_gen.html
164b1bf751710f482167acdd9dec5e25 *html/nbh_init.html
66cf4fc9b122485ca0608d3750b0bef5 *html/nbh_vit.html
28648b27610fa9674466ae89c4ec709b *html/nbm_chk.html
bc8ed409e4c8b6cbd506daea9b2505c4 *html/nbm_em.html
254f66e304c76d51a9b4577abfc392aa *html/plotCoverage.html
63082a707264909c3a3da8f7937cb20f *html/plotStrandedCoverage.html
1e6503964700fccd0c7f8b41018facc2 *html/randindx.html
c68875afe4515e019ab325245c497595 *html/ripSeek.html
af54d3bc131c8f6e25e2867be1daf299 *html/rulebaseRIPSeek.html
399c96b78575a85e8c02133ba7a926e7 *html/scoreMergedBins.html
aa148130ad0df1f58305a7c7a8797951 *html/seekRIP.html
4f065ce007ec233ee6a92f60a5cf771c *html/selectBinSize.html
7aa408611b5c04736ff66c19e4428d7c *html/statdis.html
58c36f475862656f84942b6c5b75a723 *html/viewRIP.html
