upload_dataset {RGMQL} | R Documentation

## Upload dataset

### Description

It uploads a folder (GMQL or not) containing sample files using the proper GMQL web service available on a remote server: a new dataset is created on remote repository

### Usage

    upload_dataset(url, datasetName, folderPath, schemaName = NULL,
      isGMQL = TRUE)

### Arguments

`url` | string url of server: It must contain the server address and base url; service name is added automatically
`datasetName` | name of dataset to create in repository
`folderPath` | string local path to the folder containing the samples files
`schemaName` | string name of schema used to parse the samples; schemaName available are: NARROWPEAK BROADPEAK VCF BED BEDGRAPH if schemaName is NULL, it looks for a XML schema file to read in the folderPath
`isGMQL` | logical value indicating whether it is uploaded a GMQL dataset or not

### Details

If no error occurs, it prints "Upload Complete", otherwise a specific error is printed

### Value

None

### Examples

    ## Not run:

    ## This statement defines the path to the folder "DATASET_GDM" in the
    ## subdirectory "example" of the package "RGMQL"

    test_path <- system.file("example", "DATASET_GDM", package = "RGMQL")

    ## Login to GMQL REST services suite at remote url

    remote_url <- "http://www.gmql.eu/gmql-rest/"
    login_gmql(remote_url)

    ## Upload of GMQL dataset with "dataset1" as name, without specifying any
    ## schema

    upload_dataset(remote_url, "dataset1", folderPath = test_path)

    ## End(Not run)

[Package RGMQL version 1.4.1 Index]