NetworkCollection-class {R3CPET} | R Documentation

## protein interaction networks maintaining DNA loops

### Description

The class `NetworkCollection` stores information about the set of protein networks that maintains DNA interactions.

### Usage

     NetworkCollection(networks, sizes,  TFCollection)

### Arguments

`networks` | a `list` of `list`, each list contains the set of edges in each network
`sizes` | the sizes of each network. The should correspond to the sizes of the networks
`TFCollection` | the set of all the TF involved in all the interactions.

### Details

The `NetworkCollection` contains three main information: (i) the set of edges in each network maintaining each DNA loop, (ii) the number of edges in each network and (iii) the set of TF involved in all the networks.

### Value

a `NetworkCollection` object.

### Accesors

networks

  gets the list of networks

sizes

  gets the vector containing the size of each network

TF

  gets the list of involved TF (after filtering)

### Author(s)

Mohamed Nadhir Djekidel (nde12@mails.tsinghua.edu.cn)

### References

Mohamed Nadhir D, Yang C et al 3CPET: Finding Co-factor Complexes in Chia-PET experiment using a Hierarchical Dirichlet Process, ....

### See Also

`InferNetworks`, `ChiapetExperimentData`, `buildNetworks`

### Examples

    showClass("NetworkCollection")

[Package R3CPET version 1.16.0 Index]