Hill {QSutils} | R Documentation

## Hill numbers

### Description

Functions to compute Hill numbers. `Hill` computes the Hill number of a single q value. `HillProfile` computes Hill numbers for all elements in vector `q`.

### Usage

    Hill(w, q)
    HillProfile(w, q = NULL)

### Arguments

`w` | Vector of observed counts or frequencies.
`q` | Exponent.

### Details

In `Hill` , only the first element in q is considered. `HillProfile` is vectorized and considers all elements in `q`.When `q` is NULL: in this case, a default vector is taken to obtain the full profile in the range, 0 to Inf.

### Value

A value or vector of values corresponding to the Hill number estimators of passed exponents.

### Author(s)

Mercedes Guerrero-Murillo and Josep Gregori

### References

Gregori J, Perales C, Rodriguez-Frias F, Esteban JI, Quer J, Domingo E. Viral quasispecies complexity measures. Virology. 2016 Jun;493:227-37. doi: 10.1016/j.virol.2016.03.017. Epub 2016 Apr 6. Review. PubMed PMID: 27060566.

Gregori J, Salicrú M, Domingo E, Sanchez A, Esteban JI, Rodríguez-Frías F, Quer J. Inference with viral quasispecies diversity indices: clonal and NGS approaches. Bioinformatics. 2014 Apr 15;30(8):1104-1111. Epub 2014 Jan 2. PubMed PMID: 24389655.

### See Also

`HCq`, `Renyi`

### Examples

    # Vector of observed counts.
    nr<-c(464, 62, 39, 27, 37, 16, 33, 54, 248, 20)

    # Hill numbers of order 2.
    Hill(nr,2)

    # Set of most common values.
    HillProfile(nr,q=c(0:4,Inf))

    # Full Hill numbers profile.
    HillProfile(nr)

[Package QSutils version 1.2.0 Index]