showInteraction {Path2PPI} | R Documentation

## Information about an interaction

### Description

Use `showInteraction` to get detailed information about one interaction of the predicted PPI.

### Usage

    showInteraction(path2ppi, interaction, mode="default", verbose=TRUE)

### Arguments

`path2ppi` | An object from the class `Path2PPI`.
`interaction` | Character vector consisting of the identifiers of the two interactors.
`mode` | Character string. Which information of this interaction is requested. "default": only the predicted interaction and some major information are provided. "detailed": all interactions deduced from each reference species with this interaction is provided. "references": each reference interaction of the current interaction with some major information. "references.detailed": each reference interaction of the current interaction with all available information (extracted from the corresponding iRefIndex data set).
`verbose` | Logical. `FALSE` hides messages in the output.

### Value

Data frame with the requested information defined in `mode`.

### Author(s)

Oliver Philipp MolBI-software@bioinformatik.uni-frankfurt.de

### See Also

`plot.Path2PPI`,`showReferences`

### Examples

    data(ai) #Load test data set

    ppi <- Path2PPI("Autophagy induction", "Podospora anserina", "5145")
    ppi <- addReference(ppi, "Homo sapiens", "9606", human.ai.proteins,
                        human.ai.irefindex, pa2human.ai.homologs)
    ppi <- addReference(ppi, "Saccharomyces cerevisiae (S288c)", "559292",
                        yeast.ai.proteins, yeast.ai.irefindex,
                        pa2yeast.ai.homologs)

    ppi <- predictPPI(ppi,h.range=c(1e-60,1e-20))

    interaction <- showInteraction(ppi,interaction=c("B2AT71","B2AE79"),
    mode="detailed")
    interaction

[Package Path2PPI version 1.14.0 Index]