picsFDR {PICS} | R Documentation

## Estimate the FDR.

### Description

Estimate the false detection rate for an object of class `pics` or `picsList`.

### Usage

    	picsFDR(picsIP,picsCont,filter=list(delta=c(0,Inf),se=c(0,Inf),sigmaSqF=c(0,Inf),sigmaSqR=c(0,Inf)))

### Arguments

`picsIP` | An object of class `pics` or `picsList` containing the informations for the IP reads

.

`picsCont` | An object of class `pics` or `picsList` containing the informations for the control reads

.

`filter` | filter

A list of ranges for filtering regions based on `PICS` parameters. By default filter is set to 'NULL' and all regions are used.

delta

  Length of the binding sites.

se

  Standard error.

sigmaSqF

  Forward peak variance

sigmaSqR

  Reverse peak variance

### Value

A 3 columns `data.frame` with the following columns: FDR, score, N.

### Author(s)

Xuekui Zhang

### See Also

`picsList` `pics`

[Package PICS version 2.28.0 Index]