FDR                     FDR plot for PICS
bam2gr                  pre-process bam files
makeRangedDataOutput    Create a RangedData object from a PICS output
newPics                 The pics class
pics                    Estimation of binding site positions
picsError-class         The pics class
picsFDR                 Estimate the FDR.
picsList-class          The pics class
segChrRead              Segmentation of paired-end sequencing data
segReads                Segment the genome into candidate regions
segReadsList            Segment the genome into candidate regions
segReadsListPE          List of segReadsPE objects
segReadsPE              Class to store post-segmentation result
segmentPICS             Segment the genome into candidate regions
setParaEM               Function that returns a list of parameters for
                        the EM algorithm that can be used as an
                        argument of PICS.
setParaPrior            Function that returns a list of parameters that
                        can be used as an argument of PICS.
show                    show PICS
summary                 summary PICS
summarySeg              Summarize a segReadsList object.
