load_GWAS_data {PAST} | R Documentation

## Load GWAS data

### Description

Load GWAS data

### Usage

    load_GWAS_data(association_file, effects_file,
      association_columns = c("Trait", "Marker", "Locus", "Site", "p",
      "marker_R2"), effects_columns = c("Trait", "Marker", "Locus", "Site",
      "Effect"))

### Arguments

`association_file` | The association file
`effects_file` | The effects file
`association_columns` | The names of the columns in your association data for Trait, Marker, Chromosome, Site, F, p, and marker_Rsquared
`effects_columns` | The names of the columns in your effects data for Trait, Marker, Chromosome, Site, and effect

### Value

The association data and the effects data merged into a dataframe with one row for each SNP

### Examples

    demo_association_file = system.file("extdata", "association.txt.xz",
      package = "PAST", mustWork = TRUE)
    demo_effects_file = system.file("extdata", "effects.txt.xz",
      package = "PAST", mustWork = TRUE)
    gwas_data <- load_GWAS_data(demo_association_file, demo_effects_file)

[Package PAST version 1.0.1 Index]