filterCage {ORFik} | R Documentation

## Filter peak of cage-data by value

### Description

Filter peak of cage-data by value

### Usage

    filterCage(cage, filterValue = 1, fiveUTRs = NULL)

### Arguments

`cage` | The raw cage-data, as GRanges. Must contain a score column, with the count hits per position.
`filterValue` | The integer of counts(score) to filter on for a tss to pass as hit
`fiveUTRs` | a GRangesList (NULL), if added will filter out cage reads by these following rules: all reads in region (-5:-1, 1:5) for each tss will be removed, removes noise.

### Value

the filtered Granges object

[Package ORFik version 1.4.1 Index]