tile1 {ORFik} | R Documentation

## Tile each GRangesList group to 1-base resolution.

### Description

Will tile a GRangesList into single bp resolution, each group of the list will be splited by positions of 1. Returned values are sorted as the same groups as the original GRangesList, except they are in bp resolutions. This is not supported originally by GenomicRanges.

### Usage

    tile1(grl, sort.on.return = TRUE, matchNaming = TRUE)

### Arguments

`grl` | a `GRangesList` object with names
`sort.on.return` | logical (T), should the groups be sorted before return.
`matchNaming` | logical (T), should groups keep unlisted names and meta data.(This make the list very big, for > 100K groups)

### Value

a GRangesList grouped by original group, tiled to 1

### See Also

Other ExtendGenomicRanges: `asTX`, `coveragePerTiling`, `overlapsToCoverage`, `reduceKeepAttr`, `txSeqsFromFa`, `windowPerGroup`

### Examples

    gr1 <- GRanges("1", ranges = IRanges(start = c(1, 10, 20),
                                         end = c(5, 15, 25)),
                   strand = "+")
    gr2 <- GRanges("1", ranges = IRanges(start = c(20, 30, 40),
                                         end = c(25, 35, 45)),
                   strand = "+")
    names(gr1) = rep("tx1_1", 3)
    names(gr2) = rep("tx1_2", 3)
    grl <- GRangesList(tx1_1 = gr1, tx1_2 = gr2)
    tile1(grl)

[Package ORFik version 1.4.1 Index]