windowPerTranscript {ORFik} | R Documentation

## Get coverage window per transcript

### Description

Get coverage window per transcript

### Usage

    windowPerTranscript(txdb, reads, splitIn3 = TRUE, windowSize = 100,
      fraction = "1")

### Arguments

`txdb` | a TxDb object or a path to gtf/gff/db file.
`reads` | GRanges or GAlignment of reads
`splitIn3` | a logical(TRUE), split window in 3 (leader, cds, trailer)
`windowSize` | an integer (100), size of windows
`fraction` | info on reads (which read length, or which type (RNA seq))

### Value

a data.table with columns position, score

[Package ORFik version 1.4.1 Index]