txSeqsFromFa {ORFik} | R Documentation

## Get transcript sequence from a GrangesList and a faFile or BSgenome

### Description

A small safety wrapper around `extractTranscriptSeqs`

### Usage

    txSeqsFromFa(grl, faFile, is.sorted = FALSE)

### Arguments

`grl` | a GRangesList object
`faFile` | FaFile, BSgenome or fasta/index file path used to find the transcripts
`is.sorted` | a speedup, if you know the ranges are sorted

### Value

a DNAStringSet of the transcript sequences

### See Also

Other ExtendGenomicRanges: `asTX`, `coveragePerTiling`, `overlapsToCoverage`, `reduceKeepAttr`, `tile1`, `windowPerGroup`

[Package ORFik version 1.4.1 Index]