assignAnnotations {ORFik} | R Documentation

## Overlaps GRanges object with provided annotations.

### Description

It will return same list of GRanges, but with metdata columns: trainscript_id - id of transcripts that overlap with each ORF gene_id - id of gene that this transcript belongs to isoform - for coding protein alignment in relation to cds on coresponding transcript, for non-coding transcripts alignment in relation to the transcript.

### Usage

    assignAnnotations(ORFs, con)

### Arguments

`ORFs` | - GRanges or GRangesList object of your ORFs.
`con` | - Path to gtf file with annotations.

### Value

A GRanges object of your ORFs with metadata columns 'gene', 'transcript', isoform' and 'biotype'.

[Package ORFik version 1.4.1 Index]