fpkm_calc {ORFik} | R Documentation

## Create normalizations of counts

### Description

A helper for [fpkm()] Normally use function [fpkm()], if you want unusual normalization , you can use this. Short for: Fragments per kilobase of transcript per million fragments Normally used in Translations efficiency calculations

### Usage

    fpkm_calc(counts, lengthSize, librarySize)

### Arguments

`counts` | a list, # of read hits per group
`lengthSize` | a list of lengths per group
`librarySize` | a numeric of size 1, the # of reads in library

### Value

a numeric vector

### References

doi: 10.1038/nbt.1621

### See Also

Other features: `computeFeaturesCage`, `computeFeatures`, `disengagementScore`, `distToCds`, `distToTSS`, `entropy`, `floss`, `fpkm`, `fractionLength`, `initiationScore`, `insideOutsideORF`, `isInFrame`, `isOverlapping`, `kozakSequenceScore`, `orfScore`, `rankOrder`, `ribosomeReleaseScore`, `ribosomeStallingScore`, `startRegionCoverage`, `startRegion`, `subsetCoverage`, `translationalEff`

[Package ORFik version 1.4.1 Index]