NPMdefaults {NetPathMiner} | R Documentation

## Default values for NetPathMiner

### Description

This function gets a NetPathMiner default value for a variable.

### Usage

    NPMdefaults(value)

### Arguments

`value` | a character string indicating the variable name.

### Details

NetPathMiner defines the following defaults:

- small.comp.ls Dataframe of ubiquitous metabolites. Used by `rmSmallCompounds`.

- bridge Dataframe of attributes supported by Brigde Database. Used by `fetchAttribute`.

- bridge.organisms A list of bridge supported organisms. Used by `fetchAttribute`.

- bridge.web The base URL for Brigde Database webservices. Used by `fetchAttribute`.

### Value

The defuult value for the given variable.

### Author(s)

Ahmed Mohamed

### Examples

     # Get the default list of small compounds (uniquitous metabolites).
     NPMdefaults("small.comp.ls")

[Package NetPathMiner version 1.20.0 Index]