GetDSGenes              Get differentially spliced genes.
GetDSResults            Get differential expression results of
                        significant genes.
GetGeneResults          Get differentially spliced genes.
IsoDataSet              IsoDataSet constructor
IsoDataSet-class        IsoDataSet S4 class implementation in R
IsoDataSet-getters      Getters for an IsoDataSet object.
NBSplice-package        NBSplice: Negative Binomial Models to detect
                        Differential Splicing.
NBSpliceRes             NBSpliceRes constructor
NBSpliceRes-class       NBSpliceRes S4 class implementation in R
NBSpliceRes-getters     Getters for an NBSpliceRes object.
NBSpliceRes-initialize
                        NBSpliceRes object constructor.
NBSpliceRes-print       Print an NBSpliceRes object.
NBSpliceRes-show        Show method for the NBSpliceRes class.
NBTest                  Differential splicing analysis.
buildData               GLM fitting and hypothesis testing
buildLowExpIdx          IsoDataSet low expressed isoforms detection.
designMatrix            An example of a design matrix helpful to
                        demonstrate the use of the NBSplice R package.
geneIso                 An example of isoform-gene relationship
                        specification helpful to demonstrate the use of
                        the NBSplice R package.
initialize              IsoDataSet object constructor.
isoCountsData           An example of an isoform counts matrix helpful
                        to demonstrate the use of the NBSplice R
                        package.
myDSResults             An example of an NBSpliceRes object.
myIsoDataSet            An example of an IsoDataSet object.
plotGeneResults         Method to obtain isoform's relative expression
                        barplot for an specific gene.
plotRatiosDisp          Plot the dispersion of isoform's relative
                        expression for significant genes.
plotVolcano             Method to obtain the Volcano Plot.
print                   Print an IsoDataSet object.
show                    Show method for the IsoDataSet class.
totalGeneCounts         Auxiliary function to build gene expression
                        matrix
