plot_enrichment_depletion {MutationalPatterns}R Documentation

Plot enrichment/depletion of mutations in genomic regions

Description

Plot enrichment/depletion of mutations in genomic regions

Usage

plot_enrichment_depletion(df)

Arguments

df

Dataframe result from enrichment_depletion_test()

Value

Plot with two parts. 1: Barplot with no. mutations expected and observed per region. 2: Effect size of enrichment/depletion (log2ratio) with results significance test.

See Also

enrichment_depletion_test, genomic_distribution

Examples

## See the 'genomic_distribution()' example for how we obtained the
## following data:
distr <- readRDS(system.file("states/distr_data.rds",
                    package="MutationalPatterns"))

tissue = c( "colon", "colon", "colon",
            "intestine", "intestine", "intestine",
            "liver", "liver", "liver" )

## Perform the enrichment/depletion test.
distr_test = enrichment_depletion_test(distr, by = tissue)
distr_test2 = enrichment_depletion_test(distr)

## Plot the enrichment/depletion
plot_enrichment_depletion(distr_test)
plot_enrichment_depletion(distr_test2)
[Package MutationalPatterns version 1.10.0 Index]