motiv-methods {MotIV} | R Documentation

## Motiv methods

### Description

Methods for motiv objects.

### Usage

    	 ## S4 method for signature 'motiv'
    summary(object)
    	 ## S4 method for signature 'motiv'
    names(x)
    	 ## S4 method for signature 'motiv'
    length(x)
    	 ## S4 method for signature 'motiv'
    similarity(x)
    	 ## S4 method for signature 'motiv'
    x[i,j=ANY, bysim=TRUE, ...,exact=TRUE, ignore.case=FALSE, drop=FALSE]

### Arguments

`object` | An object of class `motiv`.
`x` | An object of class `motiv`.
`i` | A string reprsenting a motif name.
`j` | NOT USED.
`bysim` | If `TRUE`, select by similarity name.
`...` | Further potential arguments passed to methods.
`ignore.case` | if FALSE, the pattern matching is case sensitive and if TRUE, case is ignored during matching
`exact` | If `TRUE`, search only for perfect name match.
`drop` | If `TRUE`, no match motifs will be dropped.

### Author(s)

Eloi Mercier <emercier@chibi.ubc.ca>

### See Also

`matches` , `alignments`, `tf`

### Examples

    showClass("motiv")

[Package MotIV version 1.40.0 Index]