getGademPWM {MotIV} | R Documentation

## Recover PWM

### Description

This function selects the PWMs contained in an object of type `gadem`.

### Usage

      getGademPWM(y)

### Arguments

`y` | A `gadem` object.

### Value

A list of PWM.

### Author(s)

Eloi Mercier <emercier@chibi.ubc.ca>

### Examples

    #####Database and Scores#####
    path <- system.file(package="MotIV")
    jaspar <- readPWMfile(paste(path,"/extdata/jaspar2010.txt",sep=""))
    jaspar.scores <- readDBScores(paste(path,"/extdata/jaspar2010_PCC_SWU.scores",sep=""))

    #####Input#####
    data(FOXA1_rGADEM)
    # motifs <- getGademPWM(gadem) #depreciated
    motifs <- getPWM(gadem)
    motifs.trimed <- lapply(motifs,trimPWMedge, threshold=1)

[Package MotIV version 1.40.0 Index]