QualityScaledModStringSet {Modstrings} | R Documentation

## QualityScaledModDNAStringSet and QualityScaledModRNAStringSet objects

### Description

title

### Usage

    QualityScaledModDNAStringSet(x, quality)

    QualityScaledModRNAStringSet(x, quality)

    readQualityScaledModDNAStringSet(filepath, quality.scoring = c("phred",
      "solexa", "illumina"), nrec = -1L, skip = 0L,
      seek.first.rec = FALSE, use.names = TRUE)

    readQualityScaledModRNAStringSet(filepath, quality.scoring = c("phred",
      "solexa", "illumina"), nrec = -1L, skip = 0L,
      seek.first.rec = FALSE, use.names = TRUE)

    writeQualityScaledModStringSet(x, filepath, append = FALSE,
      compress = FALSE, compression_level = NA)

### Arguments

`x` | For the `QualityScaled*StringSet` constructors: Either a character vector, or an `ModString`, `ModStringSet` or `ModStringViews` object. For `writeQualityScaledXStringSet`: A `QualityScaledModDNAStringSet` or `QualityScaledModRNAStringSet` object.
`quality` | A `XStringQuality` object.
`filepath, nrec, skip, seek.first.rec, use.names, append, compress, compression_level` | See `QualityScaledXStringSet-class`.
`quality.scoring` | Specify the quality scoring used in the FASTQ file. Must be one of "phred" (the default), "solexa", or "illumina". If set to " phred" (or "solexa" or "illumina"), the qualities will be stored in a `PhredQuality` (or `SolexaQuality` or `IlluminaQuality`, respectively) object.

### Value

a `QualityScaledModDNAStringSet` or `QualityScaledModDNAStringSet` object

[Package Modstrings version 1.0.3 Index]