8115c1b8dd576917bb9534c6726c62aa *DESCRIPTION
0d7d43da21bd608b62293cb8cec2beae *INDEX
086f95cd45ab2722c918c16ffc89adbb *Meta/Rd.rds
2a5fbd81efdf5721a2145b16da961b23 *Meta/data.rds
25ec83abd15128a8ae9185d893802c45 *Meta/features.rds
52adf09cf774666f06c4024ebcc6685c *Meta/hsearch.rds
d59cc5213f585cb50b50455b33180052 *Meta/links.rds
288058c23a4a8d1a93dd5a1cd755896f *Meta/nsInfo.rds
0881bbb0d590421965c92c59773c1bc9 *Meta/package.rds
e328e42b5d69b67e5fa949d5c8745fca *Meta/vignette.rds
cdcb42b04205359c7a4e7c9b1b1aa622 *NAMESPACE
64850b61b619186ba39a356d074c88f6 *NEWS
e1f4dde66e67d1b13d90354b38dcbefd *NEWS.Rd
ebf0fc819595d631b8bf280c4b049940 *R/MinimumDistance
fab5551b05ab93b46107c34ec46bd60a *R/MinimumDistance.rdb
e5713aaf9af2356c931b794352548a0f *R/MinimumDistance.rdx
0e57e8c0ac03566174a91534cd0fff56 *data/md_exp.rda
d1eb803d6c58ff8f8174f739ad7a3699 *data/md_gr.rda
8a3e3917ec140296abace15fe80a7154 *data/trioSetListExample.rda
0163422786483a5396045cd6ddf930f2 *doc/MinimumDistance.R
f81c1183bb9c95f3c3fd1f34b314d679 *doc/MinimumDistance.Rnw
66da4f57d34a3a7217108c57eac6d0a1 *doc/MinimumDistance.pdf
495dce7ecfea26efbcd55f37b50ad9b3 *doc/index.html
e03ea25b8db06926dae3d1aafebd9c33 *extdata/F.txt
efc08f8a945c313599533f15913a337c *extdata/M.txt
95db2e3447bae89e33de8a32f7c27b22 *extdata/O.txt
85bbbd3aa787fd480ae50bb2ffcd8090 *extdata/O1.txt
54e6869d2875b8cd3642e6d6fc185860 *extdata/baf.rda
ffd852d6ef47afc2784d7424175a813b *extdata/exampleFiles.R
002e045dee6803f685d493dcf6940913 *extdata/logRratio.rda
1f4fa7c977cf5e93d1c7a01856de7339 *extdata/md_granges.rds
52ee010584bb394d03f0a8eea59b735a *extdata/mdgr.rds
af6d332ea2ddb50e64beefa03b484777 *extdata/pedigreeInfo.rda
8bb642a23b584fcbaf5fb2f7b7e1bd01 *extdata/pennCNV_MendelianProb.rda
52c879d772258c1e361cf27fc7aeff24 *extdata/sample.sheet.rda
26714615fc7a01e7c93b8d8035ea3f27 *extdata/trioSet12023chr12.rda
1f5d244c8ea81e503d70887907e4b7de *help/AnIndex
96eb67a882a4585b954ebce301280c28 *help/MinimumDistance.rdb
65566b64336e56632fc25872f5fdbab4 *help/MinimumDistance.rdx
dc16debb0d0e6603b155093ee7cfeb77 *help/aliases.rds
2277e5c65988542f52f194a5fabd2d95 *help/paths.rds
33d1af569641cb79e2080b38b9de6dfd *html/00Index.html
179bde6e63e3c901392435e2d5a89f17 *html/DNAcopyParam.html
f0e20fe3523b404dec252122e6838f83 *html/Defunct.html
c5fdbec3f8972bff4d7af7ab49a49892 *html/Deprecated.html
9cec5365b8472f650ae3a5472ddbd271 *html/FilterParamMD-class.html
4a6ae83857b371f528c1eebab0ffa999 *html/FilterParamMD.html
e21444c3bb0d354eff3eed9c0f1c9091 *html/MAP.html
7fe1a0e6879185b742bdaf9c8d182ed4 *html/MAP2.html
94197e9b3aeaa2e884d310e64c36b14a *html/MDRanges-class.html
52e2513745b7462efc49f891a7731b76 *html/MinDistExperiment-class.html
10e25b27edabcbb3c11316f33d820409 *html/MinDistExperiment.html
a4a183dbb5198c5ac7a09677d8d05228 *html/MinDistGRanges-class.html
1a8de4e9aa8b918d1e91cf4d4ae35583 *html/MinDistGRanges.html
e2f5cd29538fda8324b99b0db86dc924 *html/MinDistParam-class.html
a92c0868fd547b65f53e3a5de1e7e74b *html/MinDistParam.html
b8362e981a2a13ab465acfb15feb1e90 *html/MinDistPosterior-class.html
0af6d9079cf5674a79fbe744a692854c *html/MinimumDistance.html
932e6b67035072d7166068871005a781 *html/ParentOffspring-class.html
eb974894f819542932ce8454fea33687 *html/ParentOffspringList-class.html
7bdcd298beaa15a22001d29958cce1ae *html/Pedigree-class.html
2cd8cd4df0036b3071cd55ad0ec805d8 *html/Pedigree.html
e0c687588be56faea023505cf196b4d1 *html/PennParam.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
1ed2b06b16a1dbe342362391004113d0 *html/TrioSet-class.html
67560d4576166a56f2d6cd8fc3158d82 *html/TrioSet.html
721d7db03a2ff37c04855514142459b5 *html/TrioSetList-class.html
7060ec4ed3fcf0e4ac9ed3084d678cbc *html/TrioSetList.html
0762157631ad620304e9e317c6993be5 *html/TrioSetListLD.html
be9e769ca3827dbbceca27bcf6206c4f *html/acf2.html
9e22b4a1b2381cd7a349d1941e2f1291 *html/calculateMindist.html
9dfdd213487e7fcdd627a217144c64ed *html/coercion-methods.html
d021c29d191759171d05b4516aef3b4c *html/denovo.html
0a80036e6e68bf39b5f6ae0375e195ae *html/exampleTrioSetList.html
a9d3026cc1c7f7df193e86fefb42ec93 *html/filterExperiment.html
8a02701efaa07731d5edac746fd11ffc *html/mad2.html
2772af0534178d2450403a44ff2df74c *html/mdLegend.html
11154c509f304a894a9291416b1f18dd *html/md_exp.html
f13f3db0a11c76dccf899155304633a4 *html/md_gr.html
55d12925b06fda819649f1a90797bfb9 *html/mindist.html
e67fc646828b98fbb6c9fb2336e9b04f *html/nMAD.html
9145ab34333e7577b4792c28c1f4373d *html/pedigreeGrid.html
b9efe84e73226b603309f19a0f3a45a3 *html/pedigreeName.html
4d425948a6696576d5c60b049dc211a6 *html/pedigreeViewports.html
d4612d16b501883b673b1c64c503ffc9 *html/plotDenovo.html
7ffe22cda9a288c523e01aea8dffe18d *html/range-ILimit-method.html
3af3998c1597097b1dea9a913f57c41b *html/segment2.html
8b1703686f0ca0a0e7b3e9e9ff381eaa *scripts/Affy2.R
15ff3c916756840de8888648ce5db0ed *scripts/Discordance.Rnw
de1aeda81e8c8ab6ded25df5ae2dbfab *scripts/Sweave.sty
a099ccea8ee43f05d160bcd257bb7afd *scripts/affy.R
3f33c8b63c426893a035c8f308a28ff5 *scripts/cleft_notParallel.Rnw
7e24f8634a31c17e346eb2286684ad37 *scripts/logR.baf.rda
ba7dfa59e03a85041de313b351b0f3c7 *scripts/runDiscordance.R
e1af4b14d6f30a4e4e0d1c044f671c51 *unitTests/Makefile
68b329da9893e34099c7d8ad5cb9c940 *unitTests/test_FilterParam.R
77e62a5014e356ab9d18448b2c0b384d *unitTests/test_MinDistExperiment.R
f1475ea1d62c4ffd452d99f92cd8350b *unitTests/test_Pedigree-class.R
781a05f56baa5e0dd8ec83790c5df78a *unitTests/test_PedigreeViews.R
77dfc64a92be3f977d0c916f43b20229 *unitTests/test_SnpArrayExperiment.R
e06a2b41fe11be4b705479117744ee1f *unitTests/test_TrioSetList.R
dc3c4b8f7bb58771e718df5fdc795973 *unitTests/test_calculateMindist.R
4540f66b68b46c13b9b426fe03cd204e *unitTests/test_callDenovoSegments.R
4587128861c0c33e9b8214229b5235a2 *unitTests/test_few_markers.R
c3e51589426259ed53a1a0441688468b *unitTests/test_posteriorCalls.R
f5434d8f5bb250791776114ce8fdb246 *unitTests/test_quads.R
68b329da9893e34099c7d8ad5cb9c940 *unitTests/test_rdsViews.R
2d2179773cc4e441499d731ccba69f3c *unitTests/test_splitsForCBS.R
