denovoHemizygous {MinimumDistance} | R Documentation

## Filter the genomic intervals for denovo copy number states

### Description

This function filters the genomic intervals for denovo events.

### Usage

    denovoHemizygous(object, filters = FilterParamMD(state = "221"))

    denovoHomozygous(object, filters = FilterParamMD(state = "220"))

    denovo(object, filters = FilterParamMD(state = c("220", "221", "224")))

    denovoDuplication(object, filters = FilterParamMD(state = "224"))

    ## S4 method for signature 'MinDistPosterior'
    denovoHemizygous(object,
      filters = FilterParamMD(state = "221"))

    ## S4 method for signature 'MinDistPosterior'
    denovoHomozygous(object,
      filters = FilterParamMD(state = "220"))

    ## S4 method for signature 'MinDistPosterior'
    denovoDuplication(object,
      filters = FilterParamMD(state = "224"))

    ## S4 method for signature 'MinDistPosterior'
    denovo(object, filters = FilterParamMD(state =
      c("220", "221", "224")))

### Arguments

`object` | see `showMethods(denovo)` for a list of defined methods
`filters` | an object of class `FilterParamMD`

### Details

The function `denovo` filters genomic intervals for states '220', '221', and '224', corresponding to denovo homozygous deletion, denovo hemizygous deletion, and denovo duplication, respectively.

`denovoHemizygous` filters genomic intervals for state '221'.

`denovoHomozygous` filters genomic intervals for state '220'

### See Also

FilterParamMD-class

[Package MinimumDistance version 1.28.0 Index]