idMSMStoMSP-data {MetCirc} | R Documentation

## Example data for `MetCirc`: `finalMSP`

### Description

`finalMSP` is of instance `MSP`, a container for MS/MS data. `finalMSP` is derived from the object `tissue` and `compartmentTissue`.

### Usage

    finalMSP

### Format

object of class `MSP`

### Value

object of class `MSP`

### Author(s)

Thomas Naake, thomasnaake@googlemail.com

### Source

data("idMSMStissueproject", package = "MetCirc") ## create vectors with precursor names present in tissue tissueSPL <- compartmentTissue[compartmentTissue[,"SPL"] == TRUE, 1] tissueLIM <- compartmentTissue[compartmentTissue[,"LIM"] == TRUE, 1] tissueANT <- compartmentTissue[compartmentTissue[,"ANT"] == TRUE, 1] tissueSTY <- compartmentTissue[compartmentTissue[,"STY"] == TRUE, 1]

## truncate tissue tissueSPL <- tissue[tissue[,4] tissueLIM <- tissue[tissue[,4] tissueANT <- tissue[tissue[,4] tissueSTY <- tissue[tissue[,4]

## create msp and combine msp objects of different tissues finalMSP <- convert2MSP(tissueSPL, rt = TRUE) finalMSP <- combine(finalMSP, convert2MSP(tissueLIM), rt = TRUE) finalMSP <- combine(finalMSP, convert2MSP(tissueANT), rt = TRUE) finalMSP <- combine(finalMSP, convert2MSP(tissueSTY), rt = TRUE)

## write finalMSP to idMSMStoMSP.RData save(finalMSP, file = "idMSMStoMSP.RData", compress = "xz")

[Package MetCirc version 1.14.0 Index]