thresholdLinkMatrix {MetCirc} | R Documentation

## Threshold a link matrix

### Description

Threshold a link matrix

### Usage

    thresholdLinkMatrix(linkMatrix, threshold_low, threshold_high)

### Arguments

`linkMatrix` | `matrix`, a link matrix that gives per each row information on linked features
`threshold_low` | `numeric`, threshold value for NDP values, below this value linked features will not be returned
`threshold_high` | `numeric`, threshold value for NDP values, above this value linked features will not be returned

### Details

`threshold_low` and `threshold_high` are numerical values and truncates similar/identical precursor ions; similarity is momentarily based on the normalised dot product.

### Value

`thresholdLinkMatrix` returns a matrix that gives per each row information on linked features which are linked above a certain threshold

### Author(s)

Thomas Naake, thomasnaake@googlemail.com

### Examples

    data("binnedMSP", package = "MetCirc")
    ## use only a selection
    binnedMSP <- binnedMSP[c(c(1:20, 29:48, 113:132, 240:259)),]
    similarityMat <- createSimilarityMatrix(binnedMSP)
    linkMatrix <- createLink0Matrix(similarityMatrix = similarityMat)
    thresholdLinkMatrix(linkMatrix = linkMatrix,
         threshold_low = 0.5, threshold_high=1)

[Package MetCirc version 1.14.0 Index]