Cfp1-Peaks              Peaks for Cfp1-data set
DBAmmd-Accessors        Extract data from DBAmmd objects
DBAmmd-class            Class DBAmmd
MMD                     DBAmmd Object for Cfp1 example
compDists               Compute distances between Peaks
compHists               Compute Peak histograms
compPvals               compute p-values
estimateFragmentCenters
                        estimate center of fragments
getPeakReads            Get reads from indexed bam files for defined
                        regions
metaData                Generics for DBAmmd-Class
mm9-Genes               mm9-Genes
plotDISTS4Peak          plotDISTS4Peak
plotDists               plotDists
plotPeak                plot Peak
reportResults           report results
runShinyMMDiff2         Shiny Application for interactive visualization
                        of MMD,GMD and Pearson Difference as well as
                        plotting peaks
server.MMDiff2          Shiny server code for interactive visualization
                        of MMD distances, peak plots, and MMD distances
                        by sample.
ui.MMDiff2              ui component for interactive visualization of
                        MMD,GMD and Pearson Difference as well as
                        plotting peaks
