bcMigsaRes {MIGSA} | R Documentation

## A MIGSA results object obtained from breast cancer data

### Description

A MIGSA results object (MIGSAres) obtained using the datasets:

- mainz (microarray).

- nki (microarray).

- tcga (microarray).

- tcga (RNAseq).

- transbig (microarray).

- unt (microarray).

- upp (microarray).

- vdx (microarray).

Each dataset subjects were classified using the PAM50 algorithm. For this analysis only Basal and Luminal A subjects were kept (this was the contrast used, i.e., Basal vs. LumA).

### Format

A MIGSAres object.

### Details

Datasets were tested for gene set enrichment over:

- the org.Hs.eg.db Gene Ontology gene sets, resulting in 14,291 as BP, 1,692 CC and 4,263 MF.

- KEGG gene sets downloaded from enrichr database resulting in 179 gene sets.

NOTE: For package space purposes, this bcMigsaRes object contains only the first 200 gene sets (subsetted from total result). For fully described information and a step-by-step guide in how this object was generated, please refer to MIGSA's Vignette. Full bcMigsaRes object results can be downloaded (refer to Vignette).

[Package MIGSA version 1.8.1 Index]